1 5' 3' | 2 5' 3' | 3 5' 3' |
CCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAAGGCTTATGAGGGAATCCCTCCACCATATGATAAGATGAAGAGGATGGTCATTCCTGATGCACTCAAgttagtttcttgtttctcttgattatcgttgtctctgaatttcttaattggggtttggtttcaagtctattgtttttttaatcatgtgttttaatcttgtttcttgctaattgatttgatggttggttgaaataaaattag
species | Vitis vinifera |
transcript | Vv07s0005g06490.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCTCCACCATATGATAAGATGAAGAGGATGGTCATTCCTGATGCACTCAA GGTTTTGAGGCTTCAGGCTGGACACAAGTACTGCTTGCTTGGCCGGCTTTCEST: gi|37188674|gb|CF608023.1|CF608023
genomic: CCTCCACCATATGATAAGATGAAGAGGATGGTCATTCCTGATGCACTCAAgttagtttct ... ataaaattagGGTTTTGAGGCTTCAGGCTGGACACAAGTACTGCTTGCTTGGCCGGCTTTC
EST: CCTCCACCATATGATAAGATGAAGAGGATGGTCATTCCTGATGCACTCAA GGTTTTGAGGCTTCAGGCTGGACACAAGTACTGCTTGCTTGGCCGGCTTTCEST: gi|32456523|gb|CD797697.1|CD797697
genomic: CCTCCACCATATGATAAGATGAAGAGGATGGTCATTCCTGATGCACTCAAgttagtttct ... ataaaattagGGTTTTGAGGCTTCAGGCTGGACACAAGTACTGCTTGCTTGGCCGGCTTTC
EST: CCTCCCCCATATGATAAGATGAAGAGGATGGTCATTCCTGATGCACTCAA GGTTTTGAGGCTTCAGGCTGGACACAAGTACTGCTTGCTTGGCCGGCTTTCEST: gi|37185713|gb|CF605066.1|CF605066
genomic: CCTCCACCATATGATAAGATGAAGAGGATGGTCATTCCTGATGCACTCAAgttagtttct ... ataaaattagGGTTTTGAGGCTTCAGGCTGGACACAAGTACTGCTTGCTTGGCCGGCTTTC
EST: CCTCCACCATATGATAAGATGAAGAGGATGGTCATTCCTGATGCACTCAA GGTTTTGAGGCTTCAGGCTGGACACAAGTACTGCTTGCTTGGCCGGCTTTCEST: gi|110384420|gb|EC948855.1|EC948855
genomic: CCTCCACCATATGATAAGATGAAGAGGATGGTCATTCCTGATGCACTCAAgttagtttct ... ataaaattagGGTTTTGAGGCTTCAGGCTGGACACAAGTACTGCTTGCTTGGCCGGCTTTC
EST: CCTCCACCATATGATAAGATGAAGAGGATGGTCATTCCTGATGCACTCAA GGTTTTGAGGCTTCAGGCTGGACACAAGTACTGCTTGCTTGGCCGGCTTTCEST: gi|87584078|gb|DY473371.1|DY473371
genomic: CCTCCACCATATGATAAGATGAAGAGGATGGTCATTCCTGATGCACTCAAgttagtttct ... ataaaattagGGTTTTGAGGCTTCAGGCTGGACACAAGTACTGCTTGCTTGGCCGGCTTTC
EST: CCTCCACCATATGATAAGATGAAAAGGATGGTCATTCCTGATGCACTCAA GGTTTTGAGGCTTCANGCTGGACACAAGTACTGCTTGCTTGNCCGGCTTTCEST: gi|26262092|gb|CA813155.1|CA813155
genomic: CCTCCACCATATGATAAGATGAAGAGGATGGTCATTCCTGATGCACTCAAgttagtttct ... ataaaattagGGTTTTGAGGCTTCAGGCTGGACACAAGTACTGCTTGCTTGGCCGGCTTTC
EST: CCTCCACCATATGATAAGATGAAGAGGATGGTCATTCCTGATGCACTCAA GGTTTTGAGGCTTCAGGCTGGACACAAGTACTGCTTGCTTGGCCGGCTTTCEST: gi|37187763|gb|CF607116.1|CF607116
genomic: CCTCCACCATATGATAAGATGAAGAGGATGGTCATTCCTGATGCACTCAAgttagtttct ... ataaaattagGGTTTTGAGGCTTCAGGCTGGACACAAGTACTGCTTGCTTGGCCGGCTTTC
EST: CCTCCACCATATGATAAGATGAAGAGGATGGTCATTCCTGATGCACTCAA GGTTTTGAGGCTTCAGGCTGGACACAAGTACTGCTTGCTTGGCCGGCTTTCEST: gi|71856679|gb|DT005734.1|DT005734
genomic: CCTCCACCATATGATAAGATGAAGAGGATGGTCATTCCTGATGCACTCAAgttagtttct ... ataaaattagGGTTTTGAGGCTTCAGGCTGGACACAAGTACTGCTTGCTTGGCCGGCTTTC
EST: CCTCCACCATATGATAAGATGAAGAGGATGGTCATTCCTGATGCACTCAA GGTTTTGAGGCTTCAGGCTGGACACAAGTACTGCTTGCTT
genomic: CCTCCACCATATGATAAGATGAAGAGGATGGTCATTCCTGATGCACTCAAgttagtttct ... ataaaattagGGTTTTGAGGCTTCAGGCTGGACACAAGTACTGCTTGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAAGGCTTATGAGGGAATCCCTCCACCATATGATAAGATGAAGAGGATGGTCATTCCTGATGCACTCAAgttagtttcttgtttctcttgattatcgttgtctctgaatttcttaattggggtttggtttcaagtctattgtttttttaatcatgtgttttaatcttgtttcttgctaattgatttgatggttggttgaaataaaattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG