Sequence
atgc intronic sequence ATGC exonic sequenceTGATTGGCCCTTCAAGGAACAGGAGCTCAAGGCTCTCGAAGCTCGGCGGGCACGCGCACTCGAAGAATTGGAACAGAAGAAAGCTGCGCGGAAGGAGAGGgtactcattgatttttattcctttttttttttttttgtcattttcgttttcgccggttgattatcatgattgtgctagaaattggtggacgatttttgtg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g05860.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os01g27730.1 (Oryza sativa), 5'ss of exon 2
TGATTGGCCCTTCAAGGAACAGGAGCTCAAGGCTCTCGAAGCTCGGCGGGCACGCGCACTCGAAGAATTGGAACAGAAGAAAGCTGCGCGGAAGGAGAGGgtactcattgatttttattcctttttttttttttttgtcattttcgttttcgccggttgattatcatgattgtgctagaaattggtggacgatttttgtg
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CGAGTGGCCCTTCAAGGAGCAGGAGCTCAAGGCCCTCGAGGCCCGCCGCGCGCAGGCGCTCCAGGAGCTCGAGCTCAAGAAGGAGGCGCGCAAGGAAAGGgtgagccgggcaccgcctttctccctctttgtctttctttctatccttgctgctgctaaagttgttttgccagggtcgatttctctggtttcctttcgat
upper sequence: Vv07s0005g05860.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G140602_T01 (Zea mays), 5'ss of exon 1
TGATTGGCCCTTCAAGGAACAGGAGCTCAAGGCTCTCGAAGCTCGGCGGGCACGCGCACTCGAAGAATTGGAACAGAAGAAAGCTGCGCGGAAGGAGAGGgtactcattgatttttattcctttttttttttttttgtcattttcgtt-ttcgccggttgattatcatgattgtgctagaaattggtggacgatttttgtg--
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CGAGTGGCCCTTCAAGGAGCAGGAGCTCAAGGCGCTCGAGGCCCGACGCGCGCAGGCGCTCCAGGAGCTCGAGCTCAAGAAGGAGGCGCGCAAGGAGAGGgtatg---tcatgtctggccgtctgttatcgttggtgctatccctgctgttagtttgtgtccggagcaaatagtatttcagtcttacagccgaatcaatcttc
upper sequence: Vv07s0005g05860.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G403149_T01 (Zea mays), 5'ss of exon 1
TGATTGGCCCTTCAAGGAACAGGAGCTCAAGGCTCTCGAAGCTCGGCGGGCACGCGCACTCGAAGAATTGGAACAGAAGAAAGCTGCGCGGAAGGAGAGGgtac-tcattgatttttattcctttttttttttttttgtcattttcgttttcgccggttgattatcatgattgtgctagaaattggtggacgatttttgtg
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CGAGTGGCCCTTCAAGGAGCAGGAGCTCAAGGCGCTCGAGGCCCGACGCGCGCAGGCGCTCCAGGAGCTCGAGCTCAAGAAGCAGGCGCGCAAGGAGAGGgtatgtcatgtccaagcctccaaggccctgttggtttatcctctagattatataatccagcttaaataagttaagagacaaacaaacaacgcagatttat-
upper sequence: Vv07s0005g05860.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G24060.1 (Glycine max), 5'ss of exon 2
TGATTGGCCCTTCAAGGAACAGGAGCTCAAGGCTCTCGAAGCTCGGCGGGCACGCGCACTCGAAGAATTGGAACAGAAGAAAGCTGCGCGGAAGGAGAGGgtactcattgatttttattcctttt---------tttttttttttgtcattttcgttttcgccggttgattatcatgattgtgctagaaattggtggacgatttttgtg
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CGATTGGCCCTTCAAGGAGCAGGAACTCAAGGCCCTCGAGGCGCGAAGGGCGAAGGCAATTGAGGAATTGGAACAAAAGAAAGCCGAACGCAAGGAAAGGgtaattgttgttctttccttcattgaacacaccgttccatgtattttttttttaattcccgcacgtaatatgttttgatt-tgtgatgagatagacagtga--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294966474|gb|GW839581.1|GW839581EST: ACGCGCACTCGAAGAATTGGAACAGAAGAAAGCTG-GCCGGAAGGAGAGG GCTCAGAAGAGAAAACTGGGGTTACTAGAGGATGATGATATGTCAAAAATT
genomic: ACGCGCACTCGAAGAATTGGAACAGAAGAAAGCTGCGC-GGAAGGAGAGGgtactcattg ... tgcatttcagGCTCAGAAGAGAAAACTGGGGTTACTAAAGGATGATGATATGTCAAAA-TT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATTGGCCCTTCAAGGAACAGGAGCTCAAGGCTCTCGAAGCTCGGCGGGCACGCGCACTCGAAGAATTGGAACAGAAGAAAGCTGCGCGGAAGGAGAGGgtactcattgatttttattcctttttttttttttttgtcattttcgttttcgccggttgattatcatgattgtgctagaaattggtggacgatttttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaattgg