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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGAACTGAAGAGGCCATTGAAGCCATCAAGTCTTTTAGAAGCCTTTGCTCCAAACAGGCACAAGAATCACTGGATAACGTCCTCATTGACTTATACAAGgtgcactagctaagtctttttccacaaaaactttctcatatattaataatggaagtcaatattgtatgatacgtgtag

Basic information

species Vitis vinifera
transcript Vv07s0005g05680.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g05680.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G38060.1 (Glycine max), 5'ss of exon 1
TCGAACTGAAGAGGCCATTGAAGCCATCAAGTCTTTTAGAAGCCTTTGCTCCAAACAGGCACAAGAATCACTGGATAACGTCCTCATTGACTTATACAAGgtgcactagctaagtctttttccacaaaaactttctcatatattaataatggaagtcaatattgtatgatacgtgtag-----------------------
| || ||||||| || |||||||||||||| ||||||||| ||||||| ||||||||  ||||||| ||||| ||||| || ||  ||||| | ||||||||     |  | | | |  |||   | | |  |    ||| | |  | ||  |  |   |||   |  ||     | |                       
TAGATCTGAAGAAGCAATTGAAGCCATCAAATCTTTTAGAGGCCTTTGTTCCAAACACTCACAAGAGTCACTTGATAATGTTCTTCTTGACCTTTACAAGgtattaaaattta-tatgcttcataatatatatatatataaaatttttatttagttttttatgaaaaaatgttaatggttagaaggttagtttttttgtta

upper sequence: Vv07s0005g05680.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G47070.1 (Glycine max), 5'ss of exon 2
TCGAACTGAAGAGGCCATTGAAGCCATCAAGTCTTTTAGAAGCCTTTGCTCCAAACAGGCACAAGAATCACTGGATAACGTCCTCATTGACTTATACAAGgtgc-actagctaagtctttt----tccacaaaaactttctcatatattaataatggaagtcaatattgtatgatacgtgtag------------------
| || ||||||| || |||||||||||||| ||||||||| ||||||| ||||||||  ||||||| ||||| ||||| || ||  ||||| | ||||||||   |  | |||  |  ||     |  |   | |  |  |  |   |||||| |     | | |||  ||||| |    | |                  
TAGATCTGAAGAAGCAATTGAAGCCATCAAATCTTTTAGAGGCCTTTGTTCCAAACACTCACAAGAGTCACTTGATAATGTTCTTCTTGACCTTTACAAGgtattaaaatctatatgcttcataatatatggacatataattttcatttaatactattgcttactat-atatgaaagagattgggtaaaatataggtttat