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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGAAGAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAGgttagttcagagtagttccggtgctcgaagcttggattttagatttttatcttttgaatgacggatctagacagtccaatttcattccggtgcaatagga...

Basic information

species Vitis vinifera
transcript Vv07s0005g05520.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71871867|gb|DT020922.1|DT020922
EST:     AAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAG                         GTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
genomic: AAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAGgttagttcag ... ttgttttcagGTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
EST: gi|77588015|gb|DV223218.1|DV223218
EST:     GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAG                         GTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
genomic: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAGgttagttcag ... ttgttttcagGTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
EST: gi|71863932|gb|DT012987.1|DT012987
EST:     GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAG                         GTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
genomic: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAGgttagttcag ... ttgttttcagGTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
EST: gi|110698327|gb|EE075718.1|EE075718
EST:     GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAG                         GTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
genomic: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAGgttagttcag ... ttgttttcagGTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
EST: gi|110685770|gb|EE062781.1|EE062781
EST:     GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAG                         GTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
genomic: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAGgttagttcag ... ttgttttcagGTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
EST: gi|110684760|gb|EE062403.1|EE062403
EST:     GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAG                         GTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
genomic: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAGgttagttcag ... ttgttttcagGTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
EST: gi|33403461|gb|CF209088.1|CF209088
EST:     GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAG                         GTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
genomic: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAGgttagttcag ... ttgttttcagGTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
EST: gi|110389509|gb|EC954352.1|EC954352
EST:     GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAG                         GTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
genomic: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAGgttagttcag ... ttgttttcagGTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
EST: gi|71863860|gb|DT012915.1|DT012915
EST:     GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAG                         GTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
genomic: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAGgttagttcag ... ttgttttcagGTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
EST: gi|294964497|gb|GW838300.1|GW838300
EST:     GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAG                         GTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA
genomic: GAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAGgttagttcag ... ttgttttcagGTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTTGAAGAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAGgttagttcagagtagttccggtgctcgaagcttggattttagatttttatcttttgaatgacggatctagacagtccaatttcattccggtgcaatagga

- - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - -  GGAGAA