1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCTAACACATCCTGAACTGTATGAGGACATTGGTATCAAGCCTCCTAAGGGGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattcatatttgcttcctatcaaactggtgcattacaatttatctgccattttatatctctgattgtgccatcctctttttcctttcattttggt...
species | Vitis vinifera |
transcript | Vv07s0005g05160.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGEST: gi|110703456|gb|EE080320.1|EE080320
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGEST: gi|110370827|gb|EC934375.1|EC934375
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGEST: gi|30321368|gb|CD004630.1|CD004630
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGEST: gi|110713467|gb|EE089413.1|EE089413
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGEST: gi|110700045|gb|EE077633.1|EE077633
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: GGGTCATACTATATGGAGAGCCTGGAACANGAAAGACCTTGCTTGCAAAA GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGEST: gi|71880466|gb|DT029521.1|DT029521
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACG
EST: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGEST: gi|110356778|gb|EC919853.1|EC919853
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGEST: gi|351013394|gb|FQ425425.1|FQ425425
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: GTCATACTATATGGAGAGCCTGGGAACAG-AAACACCTTGCTTTGCAAAG GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTEST: gi|110686088|gb|EE063379.1|EE063379
genomic: GTCATACTATATGGAGAGCCTGG-AACAGGAAAGACCTTGCTT-GCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGT
EST: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGEST: gi|26264508|gb|CA815571.1|CA815571
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGEST: gi|351017955|gb|FQ439121.1|FQ439121
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: TGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGEST: gi|71861429|gb|DT010484.1|DT010484
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGEST: gi|27580357|gb|CB003052.1|CB003052
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGEST: gi|71880867|gb|DT029922.1|DT029922
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGEST: gi|161714191|gb|FC062936.1|FC062936
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGEST: gi|71861598|gb|DT010653.1|DT010653
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGEST: gi|30297307|gb|CB974101.1|CB974101
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGEST: gi|27580606|gb|CB003301.1|CB003301
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGEST: gi|110390976|gb|EC955926.1|EC955926
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGEST: gi|30131170|gb|CB916509.1|CB916509
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: GGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGEST: gi|71864574|gb|DT013629.1|DT013629
genomic: GGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGEST: gi|110392599|gb|EC958132.1|EC958132
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAGEST: gi|71881961|gb|DT031016.1|DT031016
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
EST: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAG GCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
genomic: GGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattc ... atgtactcagGCAGTTGCAAACTCTACATCAGCAACTTTCTTACGTGTTGTTGGCAGTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTAACACATCCTGAACTGTATGAGGACATTGGTATCAAGCCTCCTAAGGGGGTCATACTATATGGAGAGCCTGGAACAGGAAAGACCTTGCTTGCAAAGgtgtgtattcatatttgcttcctatcaaactggtgcattacaatttatctgccattttatatctctgattgtgccatcctctttttcctttcattttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG