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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTCTTCTTATCTTCCTAACCATCTGTCTGTCAGGCAAGGAGGGTCCCTCCTTTCGTATTGAGGGGCCTCCCTGTTCCTTCAACGGAgtacttcttatgcatttgtcctttgtgtttgtattaatcctttgattcatgtaacagtgaatcatgatgtaccatttaatccatggtgttattcatatgaatcag

Basic information

species Vitis vinifera
transcript Vv07s0005g04290.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g04290.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G04080.3 (Arabidopsis thaliana), 5'ss of exon 8
------------GTGTCTTCTTATCTTCCTAACCATCTGTCTGTCAGGCAAGGAGGGTCCCTCCTTTCGTATTGAGGGGCCTCCCTGTTCCTTCAACGGAgtacttcttatgcatttgtccttt-gtgtttgtattaatcctttgattcatgtaacagtgaatcatgatgtaccatttaatccatggtgttattcatatgaatcag
               |     | ||||||||||  ||||||||||||||||||||||||||||     ||||    ||||| | |||||         ||||| ||||| || |||| |||||| ||||||    |  |    || ||  | |        ||||| || ||   ||||        |||  ||   |  |     
TTCCAATGTTATTAATGCAGGTGTCTTCCTAACATTCTGTCTGTCAGGCAAGGAGGGTCCCTCT-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71867577|gb|DT016632.1|DT016632
EST:     AGGAGGGTCCCTCCTTTCGTATTGAGGGGCCTCCCTGTTCCTTCAACGGA                         GTTGTTAAATTATATGAAAGATGCCTAATTGCATGTGCAAATTATCCCGAG
genomic: AGGAGGGTCCCTCCTTTCGTATTGAGGGGCCTCCCTGTTCCTTCAACGGAgtacttctta ... tatgaatcagGTTGTTAAATTATATGAAAGATGCCTAATTGCATGTGCAAATTATCCCGAG