1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AATGCTATTACTGAAGCCAGGAATTTCCCTTCTGTTGACAATGGAAATGCTTCTGATGTTGGTGGAGCTGCTGTTGAGCCACAGTTTGAGGAAGGTTCTGgtatgtcagtatctggcatgcttttcacatgtttatttcatacttgttgacctggtttcttttgtgtgattgttctccattaagtaaaacaagataatct...
species | Vitis vinifera |
transcript | Vv07s0005g04280.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCTGATGTTGGTGGAGCTGCTGTTGAGCCACAGTTTGAGGAAGGTTCTG TGCCAGCAATGTCTGCTGAAGAAGATCGATTGTGGAGTATAGTGAGAGCTAEST: gi|294967016|gb|GW839891.1|GW839891
genomic: TTCTGATGTTGGTGGAGCTGCTGTTGAGCCACAGTTTGAGGAAGGTTCTGgtatgtcagt ... ttacttttagTGCCAGCAATGTCTGCTGAAGAAGATCGATTGTGGAGTATAGTGAGAGCTA
EST: TTCTGATGTTGGTGGAGCTGCTGTTGAGCCACAGTTTGAGGAAGGTTCTG TGCCAGCAATGTCTGCTGAAGAAGATCGATTGTGGAGTATAG
genomic: TTCTGATGTTGGTGGAGCTGCTGTTGAGCCACAGTTTGAGGAAGGTTCTGgtatgtcagt ... ttacttttagTGCCAGCAATGTCTGCTGAAGAAGATCGATTGTGGAGTATAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGCTATTACTGAAGCCAGGAATTTCCCTTCTGTTGACAATGGAAATGCTTCTGATGTTGGTGGAGCTGCTGTTGAGCCACAGTTTGAGGAAGGTTCTGgtatgtcagtatctggcatgcttttcacatgtttatttcatacttgttgacctggtttcttttgtgtgattgttctccattaagtaaaacaagataatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacaa