Sequence
atgc intronic sequence ATGC exonic sequenceGGTTCGTTTCGATCTTGTGTACAACGTTCTTTTCAAATGCACGAAGAAGAAGCTTCTTGAGTATCCCAATCTTCATGGATACATGCGAGACATTTACCAGgtactagtttgttctgaaaacatttattatatttatggtacgatttcatgtgggtgtgcctaaaaagtgtgtatctattccctgaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g04180.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G04570.1 (Glycine max), 5'ss of exon 2
GGTTCGTTTCGATCTTGTGTACAACGTTCTTTTCAAATGCACGAAGAAGAAGCTTCTTGAGTATCCCAATCTTCATGGATACATGCGAGACATTTACCAGgtactagtttgttctgaaaacatttatta--tatttatggtacgatttcatgtgggtgtgc-ctaaaaagtgtgta-tctattccctgaacag-------
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GATTAGGTTTGATCTTGCGTATAACGTTCTTTTTAAATGCACTAAGAAGAAGCTGTGTGAGTATACCAATCTACATGCCTACATGCGTGACATTTATCAGgtagatgaagattttcaaattatctacccatcaatttttgtgttgttgattataatttcgtgctgaatactgtgtggtacgtggtgatggcatttgacag
upper sequence: Vv07s0005g04180.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G44000.1 (Arabidopsis thaliana), 5'ss of exon 2
GGTTCGTTTCGATCTTGTGTACAACGTTCTTTTCAAATGCACGAAGAAGAAGCTTCTTGAGTATCCCAATCTTCATGGATACATGCGAGACATTTACCAGgtactagtttgttctgaaaacatttattatatttatggtacgatttcatgtgggtgtgcctaaaaa---gtgtgtatctattccctgaacag
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GATTCGTTTTGATTCGGTTTACAACATTCTATTCAAATGCACCAAGAAGAAGCTTGTTGAATACCCAAATCTCTATGGCTATTTGCGCGAGATTTACCAGgttcctcttcttactggcttc-tctctgagacataaattctgcatctgggagtgtgtttcaaattatgtgtttgttgttgttgttgaaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689042|gb|EC931052.1|EC931052EST: AGCTTCTTGAGTATCCCAATCTTCATGGATACATGCGAGACATTTACCAG ATTCCTAAGGTTGCAGCAACTTGCAATTTTCAAGCAATTATGGATGGGTAT
genomic: AGCTTCTTGAGTATCCCAATCTTCATGGATACATGCGAGACATTTACCAGgtactagttt ... ccctgaacagATTCCTAAGGTTGCAGCAACTTGCAATTTTCAAGCAATTATGGATGGGTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTTCGTTTCGATCTTGTGTACAACGTTCTTTTCAAATGCACGAAGAAGAAGCTTCTTGAGTATCCCAATCTTCATGGATACATGCGAGACATTTACCAGgtactagtttgttctgaaaacatttattatatttatggtacgatttcatgtgggtgtgcctaaaaagtgtgtatctattccctgaacag
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