Sequence
atgc intronic sequence ATGC exonic sequenceTGAGGTGGATTAACTACTTGAGGCCTGATTTGAAGAGAGGCACATTCTCCCTACAGGAAGAGAATCTTATAATTGAGCTTCATTCAGTTCTTGGGAACAGgtcatcactcctctcttaatatctaaacttcaccttatcctttcttctttcttgtttttcatgtatgctgacattactgggtttttggggcttcctcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g02480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA19G41010.1 (Glycine max), 5'ss of exon 2
TGAGGTGGATTAACTACTTGAGGCCTGATTTGAAGAGAGGCACATTCTCCCTACAGGAAGAGAATCTTATAATTGAGCTTCATTCAGTTCTTGGGAACAGgtca--tcactcct--ctcttaatatctaaacttcaccttatcctttcttctttcttgtttttcatgtatgctga----cattactgggtttttggggcttcctcag-------------------------------------------------
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TTAGGTGGATCAATTACTTAAGGCCTGATTTGAAGAGAGGTACATTCTCACAAGAGGAGGAAACTCTCATCATTGAACTTCATGCAGTGCTAGGGAACAGgtaaatctattcatgatttttaatctctggctctcggcccagtgatacctgaccgttgaaaaaagaagaagaagaaaactattacatttttcttgtgattgggtcatcctagatatcttgacatagatgttctttttctttccttttctttctcag
upper sequence: Vv07s0005g02480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G27940.1 (Glycine max), 5'ss of exon 2
TGAGGTGGATTAACTACTTGAGGCCTGATTTGAAGAGAGGCACATTCTCCCTACAGGAAGAGAATCTTATAATTGAGCTTCATTCAGTTCTTGGGAACAGgtcatcactcctctcttaatatctaaacttcacc-----ttatcctttcttctttcttgtttttcatgtatgctgacattactgggtttttggggcttcctcag-------------------------------
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TTAGGTGGATCAATTACTTAAGGCCTGATTTAAAGAGAGGAACATTCTCACAAGAAGAAGAAAACCTTATCATTGAACTTCATGCAGTATTAGGGAACAGgtaatcttaattgtaattgtaattcaatctctctcatgattgaattaatcaattctctcccttttttattttctactgtggttaacttttttttcttttgcttgacatgcatattattatcctgtgctgtttcag
upper sequence: Vv07s0005g02480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA03G38410.1 (Glycine max), 5'ss of exon 3
TGAGGTGGATTAACTACTTGAGGCCTGATTTGAAGAGAGGCACATTCTCCCTACAGGAAGAGAATCTTATAATTGAGCTTCATTCAGTTCTTGGGAACAGgtcatcactcctctcttaatatctaaacttcaccttatcctttcttctttcttgtttttcatgtatgctgacattactgggtttttggggcttcctcag-------------------------------
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TTAGGTGGATCAATTATTTAAGGCCTGATTTGAAGAGAGGTACATTTTCACAAGAGGAGGAAAATCTCATCATTGAACTTCATGCAGTGCTAGGGAACAGgtaaatctaacaatccttctttacatgattttattagtctctgactctcggccgatggatacctgttttcttgtgattgggtcatcctagatatcttgacatggatatccttttgttttcttcttctcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161713802|gb|FC063790.1|FC063790EST: CTACAGGAAGAGAATCTTATAATTGAGCTTCATTCAGTTCTTGGGAACAG GTGGTCCCAAATCGCAGCACAGCTGCCTGGACGCACTGACAATGAAATAAA
genomic: CTACAGGAAGAGAATCTTATAATTGAGCTTCATTCAGTTCTTGGGAACAGgtcatcactc ... gcttcctcagGTGGTCCCAAATCGCAGCACAGCTGCCTGGACGCACTGACAATGAAATAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAGGTGGATTAACTACTTGAGGCCTGATTTGAAGAGAGGCACATTCTCCCTACAGGAAGAGAATCTTATAATTGAGCTTCATTCAGTTCTTGGGAACAGgtcatcactcctctcttaatatctaaacttcaccttatcctttcttctttcttgtttttcatgtatgctgacattactgggtttttggggcttcctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT