Sequence
atgc intronic sequence ATGC exonic sequenceTGCAGAACGTTTGGCTCTTGGTCTGTGTAGAATGCGTGGAGCGGCTCTTAAGTTAGGGCAGATGTTGAGCATACAGGACGAGACTCTTGTACCTGCTCCGgtattttatttccttattatatgcattagaattttcattcattggggaatgttcatttgcacataatttctgagaaataattccatagcctctgagattt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g02430.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G27970.1 (Glycine max), 5'ss of exon 3
TGCAGAACGTTTGGCTCTTGGTCTGTGTAGAATGCGTGGAGCGGCTCTTAAGTTAGGGCAGATGTTGAGCATACAGGACGAGACTCTTGTACCTGCTCCGgtattt---tatttccttattatatgcattagaattttcattcattggggaatgttcatttgcacataatttctgagaaataa-ttccatagcctctgagattt
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TGCCGAACGTTTGGCTCTTGCGCTATGCAGAATGCGTGGAGCGGCGCTCAAAATTGGGCAGATGTTGAGCATACAGGATGAATCTCTTGTTCCTGCTCCGgtaattggacatgtcttttatgcttgcaccttaattggtatcaaaatagctactctaaagtgtgattgtctctagagtgataagtaacggtgtttttatg----
upper sequence: Vv07s0005g02430.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G00920.1 (Glycine max), 5'ss of exon 2
TGCAGAACGTTTGGCTCTTGGTCTGTGTAGAATGCGTGGAGCGGCTCTTAAGTTAGGGCAGATGTTGAGCATACAGGACGAGACTCTTGTACCTGCTCCGgtattttatttccttattatatgcattagaattttcattcattggggaatg--ttcatttgcacataatt-tctgagaaataattccatagcctctgagattt
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TGCCGAACGTTTGGCTCTTGCACTATGTAGAATGCGTGGAGCAGCACTTAAAATTGGGCAGATGTTGAGCATACAAGATGAATCTCTTGTTCCTGCTCCGgtaatatga---catgtctcttattcttgcagcttaattggtatcaaaatggctcctctaaagtgggattgtctctagagtgattagtaagggtgtgtttatg
upper sequence: Vv07s0005g02430.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G01660.1 (Arabidopsis thaliana), 5'ss of exon 2
TGCAGAACGTTTGGCTCTTGGTCTGTGTAGAATGCGTGGAGCGGCTCTTAAGTTAGGGCAGATGTTGAGCATACAGGACGAGACTCTTGTACCTGCTCCGgtattttatttccttattatatgcattagaattttcattcattggggaatgttcatttgcacataatttctgagaaataattccatagcctctgagattt
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TGCTGAAAGATTGGCTCTTGGATTGTGTGAAATGCGTGGAGCTGCTCTTAAAGTTGGCCAAATGTTGAGTATACAGGACGAGAGTCTCGTTCCTGCTCCGgtatataccaatcttgctcaac----tagtgttctctgt--ttggttggttttgacatgaagataggttcttttgtag----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294964960|gb|GW838763.1|GW838763EST: AGTTAGGGCAGATGTTGAGCATACAGGACGAGACCCTTGTACCTGCTCCG ATTTTGGCTGCATTGGATGTAGTCCGTCAAGGAGCTGATGTGATGCCAAAG
genomic: AGTTAGGGCAGATGTTGAGCATACAGGACGAGACTCTTGTACCTGCTCCGgtattttatt ... ctccatatagATTTTGGCTGCATTGGATGTAGTCCGTCAAGGAGCTGATGTGATGCCAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCAGAACGTTTGGCTCTTGGTCTGTGTAGAATGCGTGGAGCGGCTCTTAAGTTAGGGCAGATGTTGAGCATACAGGACGAGACTCTTGTACCTGCTCCGgtattttatttccttattatatgcattagaattttcattcattggggaatgttcatttgcacataatttctgagaaataattccatagcctctgagattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaataa