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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCAAGGAGGTACATGGAAGATGAGCATATAAGGATAGATGATCTATCTATGCACTTGGGTTCAGTCTCTAGGCTCCCGAACCCATGTGCTTTTTATGGGgtaattgaattgtattctgggtctaccaactactcttattgcctgcatctgagttatgttagaactgattgaggttggatattatgcag

Basic information

species Vitis vinifera
transcript Vv07s0005g02110.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g02110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os05g04360.1 (Oryza sativa), 5'ss of exon 2
ACCAAGGAGGTACATGGAAGATGAGCATATAAGGATAGATGATCTATCTATGCACTTGGGTTCAGTCTCTAGGCTCCCGAACCCATGTGCTTTTTATGGGgtaattgaattgtattctgggtctaccaact---actcttattgcctgcatctgagttatgttagaac--tgattgaggttggatattatgcag-------------------
||| ||||||||||||||||||||||| ||  ||||||||||||| |||   ||  | || ||  |||    |   |||   ||  |||| || |||||||||| || | | |  | || |  | || ||    | |  |  |   || ||   | ||       |||  || ||||  ||        |||                     
ACCTAGGAGGTACATGGAAGATGAGCACATCCGGATAGATGATCTCTCTGCCCATCTTGGATCGCTCTTGGTGTGTCCGTTGCCTAGTGCCTTCTATGGGgtaagtgtaatcttctatgtgaatgcctaccctgatttgtgatttgtgaatgctacttcctcagcaacaatggttgaacttattgcccgtgcttcttccctttgcaattttag

upper sequence: Vv07s0005g02110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G01210.1 (Glycine max), 5'ss of exon 2
ACCAAGGAGGTACATGGAAGATGAGCATATAAGGATAGATGATCTATCTATGCACTTGGGTTCAGTCTCTAGGCTCCCGAACCCATGTGCTTTTTATGGGgtaattgaattgtattctgggtctaccaactactcttattgcctgcatctgagttatgttagaactgattgaggttggatattatgcag
 ||| |||| |||||||||||||| |||||||||||||||||| | ||    ||  |||| ||| | |  |   | ||  | ||| |||| ||||||||||||||  | || |   |||  |||    | |    ||| | | |       | |||  | |||  ||    |  |   |          
GCCACGGAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCGTCTCATCTGGGATCACTATACAACTTTCCCCAACCAAGTGCCTTTTATGGGgtaataaacttttcacctg--tctcttgattttgtttagt-catattgtaaatttaactgagatttggcaaatctcccag---------

upper sequence: Vv07s0005g02110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G01270.2 (Glycine max), 5'ss of exon 1
ACCAAGGAGGTACATGGAAGATGAGCATATAAGGATAGATGATCTATCTATGCACTTGGGTTCAGTCTCTAGGCTCCCGAACCCATGTGCTTTTTATGGGgtaattgaattgtattctgggtctaccaactactcttattgcctgcatctgagttatgttagaactgattgaggttggatattatgcag
 ||| |||| |||||||||||||| |||||||||||||||||| | ||    ||  |||| ||  | |  |   | || || ||| |||| || |||||||||||  | || |   ||  ||||    | |    ||| |  ||   ||||| ||    |     | |||  |      ||  |     
GCCACGGAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCGTCTCATCTGGGATCTCTATACAACTTTCCAAAACCAAGTGCCTTCTATGGGgtaatcaacttttcacctctgtctcttgattttgtttaat--cttattctgaatttaactgaggttaatttggcaaatctaccag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33402946|gb|CF208573.1|CF208573
EST:     TGCACTTGGGTTCAGTCTCTAGGCTCCCGAACCCATGTGCTTTTTATGGG                         GTATTTGATGGCCATGGAGGACCTGAAGCTGCAGCTTATGTCAGAAAAAAT
genomic: TGCACTTGGGTTCAGTCTCTAGGCTCCCGAACCCATGTGCTTTTTATGGGgtaattgaat ... tattatgcagGTATTTGATGGCCATGGAGGACCTGAAGCTGCAGCTTATGTCAGAAAAAAT
EST: gi|110700065|gb|EE077677.1|EE077677
EST:     TGCACTTGGGTTCAGTCTCTAGGCTCCCGAACCCATGTGCTTTTTATGGG                         GTATTTGATGGCCATGGAGGACCTGAAGCTGCAGCTTATGTCAGAAAAAAT
genomic: TGCACTTGGGTTCAGTCTCTAGGCTCCCGAACCCATGTGCTTTTTATGGGgtaattgaat ... tattatgcagGTATTTGATGGCCATGGAGGACCTGAAGCTGCAGCTTATGTCAGAAAAAAT
EST: gi|71861291|gb|DT010346.1|DT010346
EST:     TGCACTTGGGTTCAGTCTCTAGGCTCCCGAACCCATTTGCTTTTTATGGG                         GTATTTGATGGCCATGGAGGACCTGAAGCTGCAGCTTATGTC
genomic: TGCACTTGGGTTCAGTCTCTAGGCTCCCGAACCCATGTGCTTTTTATGGGgtaattgaat ... tattatgcagGTATTTGATGGCCATGGAGGACCTGAAGCTGCAGCTTATGTC
EST: gi|71860541|gb|DT009596.1|DT009596
EST:     TGCACTTGGGTTCAGTCTCTAGGCTCCCGAACCCATGTGCTTTTTATGGG                         GTATTTGATGGCCATGGAGGACCTGAAGCTGCAGCTTATGTCAGAAAAAAT
genomic: TGCACTTGGGTTCAGTCTCTAGGCTCCCGAACCCATGTGCTTTTTATGGGgtaattgaat ... tattatgcagGTATTTGATGGCCATGGAGGACCTGAAGCTGCAGCTTATGTCAGAAAAAAT