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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGCAGGGGAAAATTATGCCAACCCAAAGACATGCTTCTTTCATGTGCTCTTCAAGgtgagtatgtaactgttactcagcattttttttgtttaatggagtcaacctaactttatgatttggcgttgtgaactttgacag

Basic information

species Vitis vinifera
transcript Vv07s0005g01960.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g01960.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os01g22870.1 (Oryza sativa), 5'ss of exon 2
CCAGCAGGGGAAAATTATGCCAACCCAAAGACATGCTTCTTTCATGTGCTCTTCAAGgtgagtatgtaactgttactcagcattttttttgtttaatggagtcaacctaactttatgatttggcgttgtgaactttgacag-----------------
   |  || || |||||||| || ||||||||||| ||||| ||||| |||||||||||    |     |||||  ||  || | || || | |||| |  | |    |||  | |   | |   ||   || ||     |                 
GTGGTCGGCGAGAATTATGCAAATCCAAAGACATGTTTCTTCCATGTCCTCTTCAAGgtactcactcgcctgtttttcttcaatgttctt-tgtaattgt-ttacataaacactgtagctagcaattactaagttgattggactgtttgtatgtgaag