Sequence
atgc intronic sequence ATGC exonic sequenceTTGAAATGGCAGCTGAGATAAAAAATCTTGACACTGACTTGCAGATGTTAGTGTATGAAAATTACAACAAGTTTATCAGTGCCACTGAGACAATTAAAAGgtaatgttcccttttttacatagttgaattttattttctttattttttcaataggcaaataggtataaatgaattataaaatgcctatataacaataaca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g01440.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os03g52770.1 (Oryza sativa), 5'ss of exon 2
TTGAAATGGCAGCTGAGATAAAAAATCTTGACACTGACTTGCAGATGTTAGTGTATGAAAATTACAACAAGTTTATCAGTGCCACTGAGACAATTAAAAGgtaa--tgttcccttt--tttacatagttgaattttattttctttattttttcaataggc---aaataggtataaatgaattataaaatgcctatataacaataaca-
| | ||||| |||||||| || ||||| || || ||||| || ||| |||| ||||| ||||| |||||||||||||| || ||||| || || ||||||| |||| |||| | |||| | || ||| | | || || | | |||| | | |||| | | | ||||| | | | ||
TGAAGATGGCCGCTGAGATCAAGAATCTGGATACAGACTTACAAATGCTAGTATATGAGAATTATAACAAGTTTATCAGCGCAACTGACACTATAAAAAGgtgtgctgtttccttagaccttcata-tcccatattactcttttcatctgct-aataagtttgaggcaggtgtttactgtagttgaaatgtttgtgttttttctgcag
upper sequence: Vv07s0005g01440.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G023858_T03 (Zea mays), 5'ss of exon 2
TTGAAATGGCAGCTGAGATAAAAAATCTTGACACTGACTTGCAGATGTTAGTGTATGAAAATTACAACAAGTTTATCAGTGCCACTGAGACAATTAAAAGgtaatgttcccttttt-tacatagttgaa---ttttattttctttattttttcaataggcaaataggtataaatg-----aattataaaatgc----ctatataacaataaca----------
| | ||||| ||||||| || || || ||||| || || |||||| |||||||||| ||||| ||||||||||| ||||| ||||| || || ||||||| ||| | | || |||||| | | | || | || || ||| || | ||| | ||| | | | || ||| ||| |||| || | | |
TGAAGATGGCTACTGAGATCAAGAACCTAGACACAGATTTACAGATGCTAGTGTATGAGAATTATAACAAGTTTATTAGTGCAACTGACACTATAAAAAGgtgatgctatttccttactgatagttcagacttctccttctgttaatgagttcgatgtactaat-gctattattttctatagttgtaacatgtattgctatgtatctttgatttttttcacag
upper sequence: Vv07s0005g01440.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G01660.1 (Glycine max), 5'ss of exon 2
TTGAAATGGCAGCTGAGATAAAAAATCTTGACACTGACTTGCAGATGTTAGTGTATGAAAATTACAACAAGTTTATCAGTGCCACTGAGACAATTAAAAGgtaatgttcccttttttacatagttgaattttattttctttattttttcaataggcaaataggtataaatgaattataaaatgcctatataacaataaca
|||||||||||||||| || || ||||| ||||| |||||||| ||| | || || || |||||||||||||| |||||||| || || || || || |||| | | || || ||| | || ||| |||| | | | || |||| | | | || | ||| || | || | |
TTGAAATGGCAGCTGAAATCAAGAATCTCGACACCGACTTGCAAATGCTGGTTTACGAGAATTACAACAAGTTCATCAGTGCTACAGACACTATAAAGAGgt---gcttatgcttgtaaataacc-atttctatcttctcttgctctattgtatctaaattg-tctgcatctaatatttgattcttaaacag--------
upper sequence: Vv07s0005g01440.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G01610.1 (Glycine max), 5'ss of exon 2
TTGAAATGGCAGCTGAGATAAAAAATCTTGACACTGACTTGCAGATGTTAGTGTATGAAAATTACAACAAGTTTATCAGTGCCACTGAGACAATTAAAAGgtaatgttcccttttttacatagttgaattttattttctttattttttcaataggcaaataggtataaatgaattataaaatgcctatataacaataaca
||| |||||| ||||| || || ||||| ||||| |||||||| ||| |||| || || |||||||||||||| ||||||||||| || || || || |||| | | | | |||| | | || || | | || | | || | | | || | ||| | | | | |
TTGCAATGGCTGCTGAAATCAAGAATCTCGACACCGACTTGCAAATGCTAGTTTACGAGAATTACAACAAGTTCATCAGTGCCACAGACACTATAAAGAGgtgcgtatgcttataagttatagccatttctctcttctcttgctctatcg-tgtctacattgtt-tgcatctaatatttgcttctcaaacag--------
upper sequence: Vv07s0005g01440.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G02030.1 (Arabidopsis thaliana), 5'ss of exon 2
TTGAAATGGCAGCTGAGATAAAAAATCTTGACACTGACTTGCAGATGTTAGTGTATGAAAATTACAACAAGTTTATCAGTGCCACTGAGACAATTAAAAGgta------atgttccct---tttttacatagttgaattttattttctttattttttcaataggcaaataggtataaatgaattataaaatgcctatataacaataaca----------------
|| ||||||| |||||||| |||||||| ||||| |||||||| ||| |||| ||||||||||||||||||||||||||||| || || ||||| |||||||| ||| | | | | || || | || | | | | | ||||| || | | | | | | || || | | | |||
TTCAAATGGCTGCTGAGATTAAAAATCTCGACACAGACTTGCAAATGCTAGTCTATGAAAATTACAACAAGTTTATCAGTGCAACAGATACAATCAAAAGgtacttgtaatggttcatggatcgtttcaggtgttaagtgtgtcatttaacacttttctctatatgatttgatttcaccactcggtagtatattaaattcaaaatgttgcttctttacctggtag
upper sequence: Vv07s0005g01440.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S118_86V6.1 (Physcomitrella patens), 5'ss of exon 2
TTGAAATGGCAGCTGAGATAAAAAATCTTGACACTGACTTGCAGATGTTAGTGTATGAAAATTACAACAAGTTTATCAGTGCCACTGAGACAATTAAAAGgtaatgttcccttttttacatagttgaattt-tatt--ttctttattttttcaataggcaa-----ataggtataaatgaattataaaatgcctatataacaataaca-------------------------------------------------
| |||||||| || |||||||||||||| || | ||| |||| ||| | ||||||||||| |||||||| ||||| ||||| ||||| |||||| | |||| | ||| | | | | ||||| || | ||| | ||| | || || | | | || || | |||| ||
TGGAAATGGCTGCCGAGATAAAAAATCTGGATAGTGATATGCAAATGCTGGTGTATGAAAACTACAACAAATTTATAAGTGCAACTGATACAATTCGACGgtaggtgtttttttcatgcttgggataatttgtagtggttcaaagtacttttaggagttaatgttcgcccctccgcaagcatcgcctcttgttcttctaacttagccatatattttgctttcagagttgttgacgaggtgcttgtctgttgatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37184498|gb|CF603852.1|CF603852EST: GTGTATGAAAATTACAACAAGTTTATCAGTGCCACTGAGACAATTAAAAG GATGAAAAATAACATCGTAGGCATGGAAGCAAATATGGAACAGCTGCTTAA
genomic: GTGTATGAAAATTACAACAAGTTTATCAGTGCCACTGAGACAATTAAAAGgtaatgttcc ... ctttgaatagGATGAAAAATAACATCGTAGGCATGGAAGCAAATATGGAACAGCTGCTTAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGAAATGGCAGCTGAGATAAAAAATCTTGACACTGACTTGCAGATGTTAGTGTATGAAAATTACAACAAGTTTATCAGTGCCACTGAGACAATTAAAAGgtaatgttcccttttttacatagttgaattttattttctttattttttcaataggcaaataggtataaatgaattataaaatgcctatataacaataaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaata