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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGATCGATGGGTTGTATCTGATTGGAAGAAAGATGAGAACTTGGCAGGGCAATGGAACTACACTTCTGGGAAATGGAGTGGGGACCCGAATGATAAAGgtatgctatccatcattatactgtctgtacattaacaaagacgaaaagtgctttgagacctcttgcttctgtttaagggttctcatttcaggtgtgattttccttattaagagttttcagactacttatatggtttgaatctgggtccag

Basic information

species Vitis vinifera
transcript Vv07s0005g01390.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g01390.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G28890.1 (Glycine max), 5'ss of exon 2
GAGGATCGATGGGTTGTATCTGATTGGAAGAAAGATGAGAACTTGGCAGGGCAATGGAACTACACTTCTGGGAAATGGAGTGGGGACCCGAATGATAAAGgtatgctatccatcattatactgtctgtacattaacaaagacgaaaagtgctttgagacctcttgcttctgtttaagggttctcatttcaggtgtgattttccttattaagagtttt-cagactacttatatggtttgaatctgggtccag
||  |||||||||||  ||| |||||||| |||||||||||| |||| ||| | |||||| |||| |||||  |||||| ||| ||| | ||||| |||||||  |||   ||   |||  ||  |   |    |  |  || |  | ||  |||       || ||| |||||||   |  |  |   |  |||    ||   | || | |  | | |||                              
GAAAATCGATGGGTTAAATCAGATTGGAAAAAAGATGAGAACGTGGCTGGGGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAGgtaaactaa--attgctatgttgaatagtcgggtattat-actattattg--ttgctcatgtttacttttgtttaaaattgatattaagatatgtttggttgaatgttgatatctctgcag------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110688744|gb|EE067648.1|EE067648
EST:     GCAATGGAACTACACTTCCGGGAAATGGAGTGGGGACCTGAATGATAAAG                         GTATTCAGACTAGTGAAGACTATAAGTTCTATGCAATCTCAGCTGAGTTCC
genomic: GCAATGGAACTACACTTCTGGGAAATGGAGTGGGGACCCGAATGATAAAGgtatgctatc ... ctgggtccagGTATTCAGACTAGTGAAGACTATAAGTTCTATGCAATCTCAGCTGAGTTCC
EST: gi|110703029|gb|EE079515.1|EE079515
EST:     GAATGATAAAG                         GTATTCAGACTAGTGAAGACTATAAGTTCTATGCAATCTCAGCTGAGTTCC
genomic: GAATGATAAAGgtatgctatc ... ctgggtccagGTATTCAGACTAGTGAAGACTATAAGTTCTATGCAATCTCAGCTGAGTTCC