Sequence
atgc intronic sequence ATGC exonic sequenceTTTGCTCATAGAGATTGTATACAGAGGTGGTGCAATGAAAAAGGGAACACAACTTGTGAAATCTGTCTCCAGgtttgaattcctctttccttctctgttttttggaagctctttgttttgtgttttcttgtttttgaaagcaaagaaatcaatcatctgggctcttctgtct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g01360.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA19G40340.2 (Glycine max), 5'ss of exon 2
TTTGCTCATAGAGATTGTATACAGAGGTGGTGCAATGAAAAAGGGAACACAACTTGTGAAATCTGTCTCCAGgtttgaattcc--tctttccttctctgttttttggaagctctttgttttgtgttttcttgtt--tttgaaagcaaagaaatcaatcatc-tgggctcttctgtct
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TTTGCTCATAGAGATTGCATACAGAGATGGTGCAACGAAAAAGGAAATACAACCTGTGAAATATGTCTCCAGgtatgaactttgatcattcaattttcattttttc----ttttgcactttgtggcataacgttcatttcattctgttttattaagttataataaaatttgatttc-
upper sequence: Vv07s0005g01360.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA03G37740.1 (Glycine max), 5'ss of exon 2
TTTGCTCATAGAGATTGTATACAGAGGTGGTGCAATGAAAAAGGGAACACAACTTGTGAAATCTGTCTCCAGgtttgaattcc--tctttccttctc-tgttttttggaagctctttgttttgtgttttcttgtttttgaaagcaaagaaatcaatcatctgggctcttctgtct
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TTTGCTCATAGAGATTGCATACAGAGATGGTGCAACGAAAAAGGAAATACAACCTGTGAAATATGTCTCCAGgtatgaactttggtcattcaatttcatttttttttttggttttgcactctgtgctaacgttcagttcattctgttttattaagttat--aatcaaatttgat-
upper sequence: Vv07s0005g01360.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G01680.1 (Glycine max), 5'ss of exon 2
TTTGCTCATAGAGATTGTATACAGAGGTGGTGCAATGAAAAAGGGAACACAACTTGTGAAATCTGTCTCCAGgtttgaattcctctttc-------------------------cttctctgttttttggaagctctttgttttgtgttttcttgtttttgaaagcaaagaaatcaatcatctgggctcttctgtct-------------
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TTTGCTCACAGAGATTGCATTCAGACTTGGTGCAATGAGAAAGGAAATACAACTTGTGAAATATGTCTCCAGgtatatatgaagctttttggttaaagtgtctgttgtgatccacttttcttttcgtttttgggtcttcggtttttattttattttaatgtgatgagcaaaaactgattcttttttattttttgtaccttgtttttgcag
upper sequence: Vv07s0005g01360.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G01630.1 (Glycine max), 5'ss of exon 2
TTTGCTCATAGAGATTGTATACAGAGGTGGTGCAATGAAAAAGGGAACACAACTTGTGAAATCTGTCTCCAGgt-ttgaattcctctttccttctctgttttttggaagctctttgttttgtgttttcttgtttttgaaagc--aaagaaatcaatcatctgggctcttctgtct---
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TTTGCTCACAGAGATTGCATTCAGACATGGTGCGATGAGAAAGGAAATACAACTTGTGAAATATGTCTCCAGgtactaagctttggttaaagtttcttcattttgt---tttcttgataagt-ttctatcgattatgatttcttgatgctattaatcctc--atttcttaaaaataag
upper sequence: Vv07s0005g01360.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G02075.1 (Arabidopsis thaliana), 5'ss of exon 2
TTTGCTCATAGAGATTGTATACAGAGGTGGTGCAATGAAAAAGGGAACACAACTTGTGAAATCTGTCTCCAGgtttgaattcctctttccttctctgttttttggaagctctttgttttgtgttttcttgttttt-gaaagcaaagaaatcaatcatctgggctcttctgtct--
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TTCGCACATAGAAACTGCATACAACGTTGGTGTAATGAAAAAGGAAACACAACTTGTGAAATCTGTCTTCAGgt---actttatttttcttgctttttgattatcaatttttccgatcatcattttttttttttttggtttcgaaatgatttgaaaaaaaagtatttatgtttaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34544260|gb|CF512492.1|CF512492EST: AGAGGTGGTGCAATGAAAAAGGGAACACAACTTGTGAAATCTGTCTCCAG GAATATGAACCAGGCTACACAGCACCACCACCCCCCAAGAAGGCTCAGCTG
genomic: AGAGGTGGTGCAATGAAAAAGGGAACACAACTTGTGAAATCTGTCTCCAGgtttgaattc ... taaattgcagGAATATGAACCAGGCTACACAGCACCACCACCCCCCAAGAAGGCTCAGCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTGCTCATAGAGATTGTATACAGAGGTGGTGCAATGAAAAAGGGAACACAACTTGTGAAATCTGTCTCCAGgtttgaattcctctttccttctctgttttttggaagctctttgttttgtgttttcttgtttttgaaagcaaagaaatcaatcatctgggctcttctgtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa