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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGTGAGAGATGCTCACAGGAAGGGTGCAAATATTATTCTTATTCAGgtatgtgcttgggaagcctgggatatatatatttcttgcaggagtatgcgtgctgaatacatttttaaagctgtactgtgactttggtgtgtttatttta...

Basic information

species Vitis vinifera
transcript Vv06s0080g00560.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294965150|gb|GW836981.1|GW836981
EST:     GTTGGTGAGAGATGCTCACAGGAAGGGTGCAAATATTATTCTTATTCAG                         GAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTT
genomic: GTTGGTGAGAGATGCTCACAGGAAGGGTGCAAATATTATTCTTATTCAGgtatgtgctt ... gttcatccagGAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTT
EST: gi|71863030|gb|DT012085.1|DT012085
EST:     GTTGGTGAGAGATGCTCACAGGAAGGGTGCAAATATTATTCTTATTCAG                         GAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTT
genomic: GTTGGTGAGAGATGCTCACAGGAAGGGTGCAAATATTATTCTTATTCAGgtatgtgctt ... gttcatccagGAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTT
EST: gi|71859592|gb|DT008647.1|DT008647
EST:     GTTGGTGAGAGATGCTCACAGGAAGGGTGCAAATATTATTCTTATTCAG                         GAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTT
genomic: GTTGGTGAGAGATGCTCACAGGAAGGGTGCAAATATTATTCTTATTCAGgtatgtgctt ... gttcatccagGAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTT
EST: gi|71864994|gb|DT014049.1|DT014049
EST:     GTTGGTGAGAGATGCTCACAGGAAGGGTGCAAATATTATTCTTATTCAG                         GAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTT
genomic: GTTGGTGAGAGATGCTCACAGGAAGGGTGCAAATATTATTCTTATTCAGgtatgtgctt ... gttcatccagGAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTT
EST: gi|294963940|gb|GW836815.1|GW836815
EST:     GTTGGTGAGAGATGCTCACAGGAAGGGTGCAAATATTATTCTTATTCAG                         GAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTT
genomic: GTTGGTGAGAGATGCTCACAGGAAGGGTGCAAATATTATTCTTATTCAGgtatgtgctt ... gttcatccagGAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTT
EST: gi|26257496|gb|CA808559.1|CA808559
EST:     GTTGGTGAGAGATGCTCACAGGAAGGGTGCAAATATTATTCTTATTCAG                         GAACTATTTGAAGGATATTACTTCTGTCAAGCACGGAGGGAGGATTTCTTT
genomic: GTTGGTGAGAGATGCTCACAGGAAGGGTGCAAATATTATTCTTATTCAGgtatgtgctt ... gttcatccagGAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTT
EST: gi|71863516|gb|DT012571.1|DT012571
EST:     GTTGGTGAGAGATGCTCACAGGAAGGGTGCAAATATTATTCTTATTCAG                         GAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTT
genomic: GTTGGTGAGAGATGCTCACAGGAAGGGTGCAAATATTATTCTTATTCAGgtatgtgctt ... gttcatccagGAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTT
EST: gi|352782096|gb|FQ469394.1|FQ469394
EST:     GTTGGTGAGAGATGCTCACAGGAAGGGTGCAAATATTATTCTTATTCAG                         GAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTT
genomic: GTTGGTGAGAGATGCTCACAGGAAGGGTGCAAATATTATTCTTATTCAGgtatgtgctt ... gttcatccagGAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTT
EST: gi|71865063|gb|DT014118.1|DT014118
EST:     GTTGGTGAGAGATGCTCACAGGAAGGGTGCAAATATTATTCTTATTCAG                         GAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTT
genomic: GTTGGTGAGAGATGCTCACAGGAAGGGTGCAAATATTATTCTTATTCAGgtatgtgctt ... gttcatccagGAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTT
EST: gi|71858886|gb|DT007941.1|DT007941
EST:     GTTGGTGAGAGATGCTCACAGGAAGGGTGCAAATATTATTCTTATTCAG                         GAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTT
genomic: GTTGGTGAGAGATGCTCACAGGAAGGGTGCAAATATTATTCTTATTCAGgtatgtgctt ... gttcatccagGAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTT
EST: gi|18459688|gb|BM437966.1|BM437966
EST:     GTTGGTGAGAGATGCTCACAGGAAGGGTGCAAATATTATTCTTATTCAG                         GAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTT
genomic: GTTGGTGAGAGATGCTCACAGGAAGGGTGCAAATATTATTCTTATTCAGgtatgtgctt ... gttcatccagGAACTATTTGAAGGATATTACTTCTGTCAAGCACAGAGGGAGGATTTCTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGGTGAGAGATGCTCACAGGAAGGGTGCAAATATTATTCTTATTCAGgtatgtgcttgggaagcctgggatatatatatttcttgcaggagtatgcgtgctgaatacatttttaaagctgtactgtgactttggtgtgtttatttta

- - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataca