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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCAATTGGTTTATATGGGTTCCAGCATTATGTTTCGATATTGGGTTCCTTGATTCTAATTCCACTAGTCATAGTTCCGGCAATGGGTGGTGATCATgtaagtatttctaatatatttcttctgactgattgtacttcatatttgtttagattgaatgctgtaagttgtagatttgcttgatctaattgaagatagtgggtgtag

Basic information

species Vitis vinifera
transcript Vv06s0061g01310.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G05280.1 (Glycine max), 5'ss of exon 2
TTCCAATTGGTTTATATGGGTTCCAGCATTATGTTTCGATATTGGGTTCCTTGATTCTAATTCCACTAGTCATAGTTCCGGCAATGGGTGGTGATCATgtaagtatttctaatatatttcttctgactgattgtacttcatatttgtttagatt-gaatgctgtaagt-tgtagatttgcttgatctaattgaagatagtgggtgtag
|||| |||||| | || ||  | || |||||  | |||||||||||||| |||||||| ||||| || || ||||||||||||||||| ||   |||||| |||      | ||| |||    | |   | |   || ||||     ||| |   |||     ||||  |||| | |   |  || |  ||    |   | |||    
TTCCCATTGGTGTGTACGGTATTCAACATTACTTATCGATATTGGGTTCGTTGATTCTCATTCCGCTCGTTATAGTTCCGGCAATGGGAGGCTCTCATgtgagtg-----actatgtttggattaataaactt--ctccataagcacttaaaggagaagaaaataagaatgtaaaatgaatgaatattgttttttaccttaggtt---

upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA12G30670.1 (Glycine max), 5'ss of exon 2
TTCCAATTGGTTTATATGGGTTCCAGCATTATGTTTCGATATTGGGTTCCTTGATTCTAATTCCACTAGTCATAGTTCCGGCAATGGGTGGTGATCATgtaagtatttctaatatatttcttctgactgattgtacttcatatttgtttagattgaatgctgtaagttgtagatttgcttgatctaattgaagatagtgggtgtag
|||| |||||| | || ||  | || |||||  |||||||||||||||| |||||||| ||||| || || ||||||||||| ||||| ||   |||||| |||  ||  |   | |||  ||  ||| |    |  |  |  |     |  ||    |     | || |||         |||  | || | |   ||  |    
TTCCCATTGGTGTGTACGGTATTCAACATTACTTTTCGATATTGGGTTCGTTGATTCTCATTCCGCTCGTTATAGTTCCGGCGATGGGAGGCTCTCATgtgagtgatttca---tgttttctccaactaaggccatgttttgataaacgaacttctccgtaagcacttataggagaagagaatcagaatgtaaa--atgaatt---