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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGTCAATGGCTTCTGAACCCAAGGAATCTCCCTCTAACAATCCGGGCCTCCATTCCAGCCCTGATGAGGCCACTAAAGGATACTTCATGCAACAGACTgtaccctctctctctatttatattttctgtagttatgtagctgttgaagttgatttattttgttttcttttaatttaatttaatttttaatggcag

Basic information

species Vitis vinifera
transcript Vv06s0061g00460.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g00460.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G08110.2 (Arabidopsis thaliana), 5'ss of exon 1
GGCGTCAATGGCTTCTGAACCCAAGGAATCTCCCTCTAACAATCCGGGCCTCCATTCCAGCCCTGATGAGGCCACTAAAGGATACTTCATGCAACAGACTgtaccctctctctctatttatattttctgtagttatgtagctgttgaagttgatttattttgttttcttttaatttaattta--atttttaatggcag--
|   || ||||| || ||| | | |||||| ||  | |||||||| ||| |     | |  |  |||||||| || ||||||||| |||||||||||||||||   |  ||||   | ||| |    | | |||    |     || | |     |||     |      | || |   ||    || |||| |  |   
GTTTTCCATGGCGTCGGAAGCGAGGGAATCACCAGCAAACAATCCTGGCTTGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACTgtaagattcctctgcctctatttgcgatttggttgatcatgacctgtaatctccgtatcgaaatcggaagttatatgtcttggggttcttaaggtgaagg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110407172|gb|EC972769.1|EC972769
EST:     TCCATTCCAGCCCTGATGAGGCCACTAAAGGATACTTCATGCAACAGACT                         ATGTATCGGATTAAGGACCCTAAAGTCAGTCTCGATTTCTATTCTCGCGTA
genomic: TCCATTCCAGCCCTGATGAGGCCACTAAAGGATACTTCATGCAACAGACTgtaccctctc ... ttaatggcagATGTATCGGATTAAGGACCCTAAAGTCAGTCTCGATTTCTATTCTCGCGTA
EST: gi|22010774|gb|BQ795808.1|BQ795808
EST:     TCCATTCCAGCCCTGATGAGGCCACTAAAGGATACTTCATGCAACAGACT                         ATGTATCGGATTAAGGACCCTAAAGTCAGTCTCGATTTCTATTCTCGCGTA
genomic: TCCATTCCAGCCCTGATGAGGCCACTAAAGGATACTTCATGCAACAGACTgtaccctctc ... ttaatggcagATGTATCGGATTAAGGACCCTAAAGTCAGTCTCGATTTCTATTCTCGCGTA