1 5' 3' | 2 5' 3' | 3 5' 3' |
ACTACCAGAAACGGCTGCTTCTGTAGCAATTGCTGCCACAGTCGTGGGTGCTGCAGCTACACTTCTTGTAAGAAGAAGTAGACCTTCTGAAGCAACTGAGgtatgtaactaatctacaaacatgtaactaaaaacatcatgtctaaaaggaaaatcttaacatatctgcaacttaggtaaagaagaatgcttgatgtatc...
species | Vitis vinifera |
transcript | Vv06s0061g00330.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTGCAGCTACACTTCTTGTAAGAAGAAGTAGACCTTCTGAAGCAACTGAG ATTCCTTTAAAAATTTGTGAAGATTGTGGTGGTTCTGGCATATGTTCTGAAEST: gi|352780899|gb|FQ466212.1|FQ466212
genomic: CTGCAGCTACACTTCTTGTAAGAAGAAGTAGACCTTCTGAAGCAACTGAGgtatgtaact ... taggaaacagATTCCTTTAAAAATTTGTGAAGATTGTGGTGGTTCTGGCATATGTTCTGAA
EST: CTGCAGCTACACTTCTTGTAAGAAGAAGTAGACCTTCTGAAGCAACTGAGGAAACAGEST: gi|32249964|gb|CD715783.1|CD715783
genomic: CTGCAGCTACACTTCTTGTAAGAAGAAGTAGACCTTCTGAAGCAACT---G----AGgtatgtaact ... tagg
EST: CTGCAGCTACACTTCTTGTAAGAAGAAGTAGACCTTCTGAAGCAACTGAG ATTCCTTTAAAAATTTGTGAAGATTGTGGTGGTTCTGGCATATGTTCTGAAEST: gi|110426261|gb|EC992663.1|EC992663
genomic: CTGCAGCTACACTTCTTGTAAGAAGAAGTAGACCTTCTGAAGCAACTGAGgtatgtaact ... taggaaacagATTCCTTTAAAAATTTGTGAAGATTGTGGTGGTTCTGGCATATGTTCTGAA
EST: CTGCAGCTACACTTCTTGTAAGAAGAAGTAGACCTTCTGAAGCAACTGAG ATTCCTTTAAAAATTTGTGAAGATTGTGGTGGTTCTGGCATATGTTCTGAAEST: gi|30328349|gb|CD011611.1|CD011611
genomic: CTGCAGCTACACTTCTTGTAAGAAGAAGTAGACCTTCTGAAGCAACTGAGgtatgtaact ... taggaaacagATTCCTTTAAAAATTTGTGAAGATTGTGGTGGTTCTGGCATATGTTCTGAA
EST: CTGCAGCTACACTTCTTGTAAGAAGAAGTAGACCTTCTGAAGCAACTGAG ATTCCTTTAAAAATTTGTGAAGATTGTGGTGGTTCTGGCATATGTTCTGAAEST: gi|352776778|gb|FQ472665.1|FQ472665
genomic: CTGCAGCTACACTTCTTGTAAGAAGAAGTAGACCTTCTGAAGCAACTGAGgtatgtaact ... taggaaacagATTCCTTTAAAAATTTGTGAAGATTGTGGTGGTTCTGGCATATGTTCTGAA
EST: CTGCAGCTACACTTCTTGTAAGAAGAAGTAGACCTTCTGAAGCAACTGAGGAAACAGEST: gi|27578380|gb|CB001075.1|CB001075
genomic: CTGCAGCTACACTTCTTGTAAGAAGAAGTAGACCTTCTGAAGCAACT---G----AGgtatgtaact ... tagg
EST: CTGCAGCTACACTTCTTGTAAGAAGAAGTAGACCTTCTGAAGCAACTGAG ATTCCTTTAAAAATTTGTGAAGATTGTGGTGGTTCTGGCATATGTTCTGAA
genomic: CTGCAGCTACACTTCTTGTAAGAAGAAGTAGACCTTCTGAAGCAACTGAGgtatgtaact ... taggaaacagATTCCTTTAAAAATTTGTGAAGATTGTGGTGGTTCTGGCATATGTTCTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTACCAGAAACGGCTGCTTCTGTAGCAATTGCTGCCACAGTCGTGGGTGCTGCAGCTACACTTCTTGTAAGAAGAAGTAGACCTTCTGAAGCAACTGAGgtatgtaactaatctacaaacatgtaactaaaaacatcatgtctaaaaggaaaatcttaacatatctgcaacttaggtaaagaagaatgcttgatgtatc
- - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaat