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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCTTGCAGATTCAGCTAGGAGGTAAAACGTCCTCAATTCTTTCATGTGATGTAGAACGCCAACCCATTCCACAAGATTTAATGACCAGCACAAGCGAGgttgcctattttgtagctcacaagttcttctttgccttcaaaatcttgccatattcggataattcaaaaaatgatgtttcttttgcttgcag

Basic information

species Vitis vinifera
transcript Vv06s0061g00040.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA01G43650.1 (Glycine max), 5'ss of exon 2
GGTCTTGCAGATTCAGCTAGGAGGTAAAACGTCCTCAATTCTTTCATGTGATGTAGAACGCCAACCCATTCCACAAGATTTAATGACCAGCACAAGCGAGgttgcctattttgtagctcacaagttcttctttgccttcaaaatcttgccatattcggataattcaaaaaatgat-gtttcttttgcttgcag
||| |||| | ||||  ||   ||| || | || |||    ||  |  ||| |||||||| ||||||||||| ||| || ||||||| ||||||||||||||  | |  |    | |||  || ||    ||  |    |     |||   | || | || ||  | |   | || | || |  |||||||||
GGTTTTGCGGGTTCAATTAAATGGTCAACCATCTTCAGACTTTGAACATGAAGTAGAACGACAACCCATTCCCCAACATGTAATGACTAGCACAAGCGAGgtgacttgatcaaga-ctctaaaatttgagttctctggtatttgtttgatctcttagcatcat--agaggttaattgattttgctgcttgcag

upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G01820.1 (Glycine max), 5'ss of exon 2
GGTCTTGCAGATTCAGCTAGGAGGTAAAACGTCCTCAATTCTTTCATGTGATGTAGAACGCCAACCCATTCCACAAGATTTAATGACCAGCACAAGCGAGgttgcctattttgtagctcacaagttcttctttgccttcaaaatcttgccatattcggataattcaaaaaatgat-gtttcttttgcttgcag
||| |||| | ||||  ||   ||| || | || |||    ||  |  ||| |||||||| ||||||||||| ||| || | ||||| ||||||||||||||  | |  |    |    | || ||               | |  |    |||| |  | ||    |   | || | || |  |||||||||
GGTTTTGCGGGTTCAATTAAATGGTCAACCATCTTCAGACTTTGAACATGAAGTAGAACGACAACCCATTCCCCAACATGTTATGACTAGCACAAGCGAGgtgacttgatcaagactctaaaattt--------------gagttctctggtatttgtttgatctcgaggttaattggttttgctgcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161721153|gb|FC070389.1|FC070389
EST:     ATGTAGAACGCCAACCCATTCCACAAGATTTAATGACCAGCACAAGCGAG                         GATCTCTTTGATTTTATTGCTTCATCACTTAAGCAATTTGTTGAAAGGGAA
genomic: ATGTAGAACGCCAACCCATTCCACAAGATTTAATGACCAGCACAAGCGAGgttgcctatt ... ttgcttgcagGATCTCTTTGATTTTATTGCTTCATCACTTAAGCAATTTGTTGAAAGGGAA