1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCAGCAGACAGAGCACACACTATTAAGGCTGTTTGTATTGTTCACAATGAGACCGCTACTGGAGTTACCAACAATTTGGCTGCAGTAAGGAGAATCCTTGgtaagaattcattttctaggccacatcttcatctgcaaggaaacttcacattaggattctgtcattttccactattgggttctcatttttaacgttcttttttgtattgaaatatcag
species | Vitis vinifera |
transcript | Vv06s0009g03740.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GACCGCTACTGGAGTTACCAACAATTTGGCTGCAGTAAGGAGAATCCTTG ATGAGTACCGTCATCCAGCACTCTTTCTTGTTGATGGGGTGTCATCCATATEST: gi|110731104|gb|EE108948.1|EE108948
genomic: GACCGCTACTGGAGTTACCAACAATTTGGCTGCAGTAAGGAGAATCCTTGgtaagaattc ... gaaatatcagATGAGTACCGTCATCCAGCACTCTTTCTTGTTGATGGGGTGTCATCCATAT
EST: GACCGCTACTGGAGTTACCAACAATTTGGCTGCAGTAAGGAGAATCCTTG ATGAGTACCGTCATCCAGCACTCTTTCTTGTTGATGGGGTGTCATCCATATEST: gi|351042988|gb|FQ434429.1|FQ434429
genomic: GACCGCTACTGGAGTTACCAACAATTTGGCTGCAGTAAGGAGAATCCTTGgtaagaattc ... gaaatatcagATGAGTACCGTCATCCAGCACTCTTTCTTGTTGATGGGGTGTCATCCATAT
EST: GACCGCTACTGGAGTTACCAACAATTTGGCTGCAGTAAGGAGAATCCTTG ATGAGTACCGTCATCCAGCACTCTTTCTTGTTGATGGGGTGTCATCCATACEST: gi|110732892|gb|EE108586.1|EE108586
genomic: GACCGCTACTGGAGTTACCAACAATTTGGCTGCAGTAAGGAGAATCCTTGgtaagaattc ... gaaatatcagATGAGTACCGTCATCCAGCACTCTTTCTTGTTGATGGGGTGTCATCCATAT
EST: GACCGCTACTGGAGTTACCAACAATTTGGCTGCAGTAAGGAGAATCCTTG ATGAGTACCGTCATCCAGCACTCTTTCTTGTTGATGGGGTGTCATCCATATEST: gi|161715200|gb|FC068693.1|FC068693
genomic: GACCGCTACTGGAGTTACCAACAATTTGGCTGCAGTAAGGAGAATCCTTGgtaagaattc ... gaaatatcagATGAGTACCGTCATCCAGCACTCTTTCTTGTTGATGGGGTGTCATCCATAT
EST: GACAGCTACTGGAGTTACCAACAATTTGGCTGCAGTAAGGAGAATCCTTG ATGAGTACAGTCATCCAGCACTCTTTCTTGTTGATGGGGTGTCATCCATATEST: gi|110708824|gb|EE086809.1|EE086809
genomic: GACCGCTACTGGAGTTACCAACAATTTGGCTGCAGTAAGGAGAATCCTTGgtaagaattc ... gaaatatcagATGAGTACCGTCATCCAGCACTCTTTCTTGTTGATGGGGTGTCATCCATAT
EST: GACCGCTACTGGAGTTACCAACAATTTGGCTGCAGTAAGGAGAATCCTTG ATGAGTACCGTCATCCAGCACTCTTTCTTGTTGATGGGGTGTCATCCATATEST: gi|18458828|gb|BM437106.1|BM437106
genomic: GACCGCTACTGGAGTTACCAACAATTTGGCTGCAGTAAGGAGAATCCTTGgtaagaattc ... gaaatatcagATGAGTACCGTCATCCAGCACTCTTTCTTGTTGATGGGGTGTCATCCATAT
EST: GACAGCTACTGGAGTTACCAACAATTTGGCTGCAGTAAGGAGAATCCTTG ATGAGTACAGTCATCCAGCACTCTTTCTTGTTGATGGGGTGTCATCCATATEST: gi|156737099|gb|EV241220.1|EV241220
genomic: GACCGCTACTGGAGTTACCAACAATTTGGCTGCAGTAAGGAGAATCCTTGgtaagaattc ... gaaatatcagATGAGTACCGTCATCCAGCACTCTTTCTTGTTGATGGGGTGTCATCCATAT
EST: ACAGCTACTGGAG-TACCAACAAATTGGGCTGCAGTANGGAGAATCCTTG ATGAGTACAGTCATCCAGCACTCTTTC-TG-TGATGGGGGGTGTCATCCATEST: gi|156737102|gb|EV241223.1|EV241223
genomic: ACCGCTACTGGAGTTACCAAC-AATTTGGCTGCAGTAAGGAGAATCCTTGgtaagaattc ... gaaatatcagATGAGTACCGTCATCCAGCACTCTTTCTTGTTGAT--GGGGTGTCATCCAT
EST: GACAGCTACTGGAGTTACCAACAATTTGGCTGCAGTAAGGAGAATCCTTG ATGAGTACAGTCATCCAGCACTCTTTCTTGTTGATGGGGTGTCATCCATATEST: gi|71869781|gb|DT018836.1|DT018836
genomic: GACCGCTACTGGAGTTACCAACAATTTGGCTGCAGTAAGGAGAATCCTTGgtaagaattc ... gaaatatcagATGAGTACCGTCATCCAGCACTCTTTCTTGTTGATGGGGTGTCATCCATAT
EST: GACAGCTACTGGAGTTACCAACAATTTGGCTGCAGTAAGGAGAATCCTTG ATGAGTACAGTCATCCAGCACTCTTTCTTGTTGATGGGGTGTCATCCATATEST: gi|71873684|gb|DT022739.1|DT022739
genomic: GACCGCTACTGGAGTTACCAACAATTTGGCTGCAGTAAGGAGAATCCTTGgtaagaattc ... gaaatatcagATGAGTACCGTCATCCAGCACTCTTTCTTGTTGATGGGGTGTCATCCATAT
EST: GACCGCTACTGGAGTTACCAACAATTTGGCTGCAGTAAGGAGAATCCTTG ATGAGTACCGTCATCCAGCACTCTTTCTTGTTGATGGGGTGTCATCCATAT
genomic: GACCGCTACTGGAGTTACCAACAATTTGGCTGCAGTAAGGAGAATCCTTGgtaagaattc ... gaaatatcagATGAGTACCGTCATCCAGCACTCTTTCTTGTTGATGGGGTGTCATCCATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGCAGACAGAGCACACACTATTAAGGCTGTTTGTATTGTTCACAATGAGACCGCTACTGGAGTTACCAACAATTTGGCTGCAGTAAGGAGAATCCTTGgtaagaattcattttctaggccacatcttcatctgcaaggaaacttcacattaggattctgtcattttccactattgggttctcatttttaacgttcttttttgtattgaaatatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA