Sequence
atgc intronic sequence ATGC exonic sequenceGAGTTGGTGGGTATGCTTATCTATTGGAGCCTTTATGGTGGTTGGGCATGATCACAAgtaagtgttttctattaggtttgtttgaatttttgtgggttttggttattttgttttttcttgtttactttaggtttgggacccctatgatcatgtcaac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g03650.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA14G03790.1 (Glycine max), 5'ss of exon 2
GAGTTGGTGGGTATGCTTATCTATTGGAGCCTTTATGGTGGTTGGGCATGATCACAAgtaagtgttttctattaggtttgtttgaatttttgtgggttttg-gttattttgttttttcttgtttactttaggtttgggacccctatgatcatgtcaac--
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GTGTTGGTGGGTATTATTATCTCTTGGAGCCATTATGGTGGGTGGGAATGATCACAAgtaagctctaagtgct-gttttaattttgtttctatgcttttagtattgtcatttttgtgttttttgggggtagaatctagattttcttg--taccttaatgg
upper sequence: Vv06s0009g03650.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G44980.2 (Glycine max), 5'ss of exon 2
GAGTTGGTGGGTATGCTTATCTATTGGAGCCTTTATGGTGGTTGGGCATGATCACAAgtaagtgttttctattaggtttgtttgaatttttgtgggttttg-gttatt-ttgttttttcttgtttactttaggtttgggacccctatgatcatgtcaac
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GTGTTGGTGGTTATTATTATCTCTTGGAGCCACTATGGTGGGTGGGAATGATCACAAgtaagctttaaatact--gtttaattttgcttctatgcttttagtattgtcatttttgtttttttttttttttgggtgtagaatctagattttcttgtacctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718932|gb|FC067009.1|FC067009EST: TGGGTATGCTTATCTATTGGAGCCTTTATGGTGGTTGGGCATGATCACAA TGATTGTGGGAGAGGTTGCTAATTTTGTGGCATATGCATTCGCCCCAGCTG
genomic: TGGGTATGCTTATCTATTGGAGCCTTTATGGTGGTTGGGCATGATCACAAgtaagtgttt ... tctgatgtagTGATTGTGGGAGAGGTTGCTAATTTTGTGGCATATGCATTCGCCCCAGCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGTTGGTGGGTATGCTTATCTATTGGAGCCTTTATGGTGGTTGGGCATGATCACAAgtaagtgttttctattaggtttgtttgaatttttgtgggttttggttattttgttttttcttgtttactttaggtttgggacccctatgatcatgtcaac
- - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - TGGTGG