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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGTAGAAATGGGAGTCATGGGGGTGTATGTGCGATCTGTCTGGATACGATAGTGCTTCAGGAAACTGCTATGGTAAAAGGTTGCGAGCACGCATACTGgtgtgttatcaattttgatatatagttgtcattagtcatttccattttgaatggattattttcgttcttggctttgagatacactgttactactgctctt...

Basic information

species Vitis vinifera
transcript Vv06s0009g03430.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g03430.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA07G35790.1 (Glycine max), 5'ss of exon 2
AGAGTAGAAATGGGAGTCATGGGGGTGTATGTGCGATCTGTCTGGATACGATAGTGCTTCAGGAAACTGCTATGGTAAAAGGTTGCGAGCACGCATACTGgtgtgttatcaattttgatatatagttgtcattagtcatttccattttgaatggattattttcgttcttggctttgagatacac-tgttactactgctctt---
 | |     |||| || ||||||||  | ||||| |||||  |||||| ||||||||| |||||||||||| | ||||||||||||||||| || ||||||| |||  | ||    ||| | | | |||  ||       |  | |||||    | | |  |  || ||   | ||  ||   | | || | | |||| ||   
TGGGGTCTTATGGAAGCCATGGGGGAATCTGTGCTATCTGCTTGGATAAGATAGTGCTGCAGGAAACTGCTCTTGTAAAAGGTTGCGAGCATGCTTACTGgtttgtc-tgaac---gatctcttgctgttcttttcagaattaagtttgacgaaaatgtgctttttttttattatggtatgttcattttccaattgcttttgga

upper sequence: Vv06s0009g03430.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G05050.1 (Glycine max), 5'ss of exon 2
AGAGTAGAAATGGGAGTCATGGGGGTGTATGTGCGATCTGTCTGGATACGATAGTGCTTCAGGAAACTGCTATGGTAAAAGGTTGCGAGCACGCATACTGgtgtgtt--atcaattttgatatatagttgtcattagtcatttccattttgaatggattattttcgttcttggct-ttgagatacactgttactactgctctt
||    |  ||||  | ||||||||  | ||||| || ||  |||||| ||||||||| |||||||||||| | ||||||||||||||||| || ||||||| |||   | | || |     | | ||| |||  | | |  |        ||||     ||||  || ||   | ||  | ||   |  |  |||   |   
AGGTGGGGTATGGAGGCCATGGGGGAATCTGTGCTATTTGCTTGGATAAGATAGTGCTGCAGGAAACTGCTCTTGTAAAAGGTTGCGAGCATGCTTACTGgtttgtctgaacgatctcttgctgttgttttcag-aattaagtttggggaaaatgtgcctttttatttatttattattatggtatgtttattttacgattg--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26267617|gb|CA818680.1|CA818680
EST:     TTCAGGAAACTGCTATGGTAAAAGGTTGCGAGCACGCATACTG                         TGTGACATGCATCCTTCGTTGGGCCACATATAGTCAGAAACCAACATGCCC
genomic: TTCAGGAAACTGCTATGGTAAAAGGTTGCGAGCACGCATACTGgtgtgttatc ... ttttcaacagTGTGACATGCATCCTTCGTTGGGCCACATATAGTCAGAAACCAACATGCCC
EST: gi|30297350|gb|CB974144.1|CB974144
EST:     ATAGTGCTTCAGGAAACTGCTATGGTAAAAGGTTGCGAGCACGCATACTG                         TGTGACATGCATCCTTCGTTGGGCCACATACAGTCAGAAACCAACATGCCC
genomic: ATAGTGCTTCAGGAAACTGCTATGGTAAAAGGTTGCGAGCACGCATACTGgtgtgttatc ... ttttcaacagTGTGACATGCATCCTTCGTTGGGCCACATATAGTCAGAAACCAACATGCCC