Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATGTAAAGGTTTACGCCGCGGTTCTGGAGAAACCCGGAAGTCACTTCCCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctttctaattttaactacttttcctttttttttgtatcagtccttgttgttagtcaattcattattattttggttgaggattttgcaaatttt...

Basic information

species Vitis vinifera
transcript Vv06s0009g02410.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110733139|gb|EE109067.1|EE109067
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110688499|gb|EE067123.1|EE067123
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|22014968|gb|BQ800002.1|BQ800002
EST:     GTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTT-GGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: GTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110391715|gb|EC956712.1|EC956712
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110370729|gb|EC932789.1|EC932789
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110708007|gb|EE085056.1|EE085056
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110370946|gb|EC934587.1|EC934587
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110703547|gb|EE080488.1|EE080488
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|77577569|gb|DV217524.1|DV217524
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110724589|gb|EE100547.1|EE100547
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|349810721|gb|FQ402964.1|FQ402964
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110371899|gb|EC936031.1|EC936031
EST:     CGCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|30137518|gb|CB922856.1|CB922856
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110689133|gb|EE065091.1|EE065091
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110381102|gb|EC946419.1|EC946419
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110389388|gb|EC954221.1|EC954221
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110690545|gb|EE067736.1|EE067736
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110687772|gb|EE065564.1|EE065564
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110377549|gb|EC942622.1|EC942622
EST:     CNCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|71874035|gb|DT023090.1|DT023090
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110691555|gb|EE069793.1|EE069793
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110390404|gb|EC955311.1|EC955311
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|352790511|gb|FQ478151.1|FQ478151
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110361322|gb|EC924788.1|EC924788
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110694104|gb|EE070916.1|EE070916
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110697796|gb|EE075187.1|EE075187
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGNTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTG
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTG-TTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTG
EST: gi|22014913|gb|BQ799947.1|BQ799947
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110686577|gb|EE064377.1|EE064377
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110378542|gb|EC943679.1|EC943679
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110690480|gb|EE067614.1|EE067614
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110689894|gb|EE066517.1|EE066517
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|161718733|gb|FC065059.1|FC065059
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|71867889|gb|DT016944.1|DT016944
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110690431|gb|EE067523.1|EE067523
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110698401|gb|EE075859.1|EE075859
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110707905|gb|EE084834.1|EE084834
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|351031309|gb|FQ445334.1|FQ445334
EST:     AATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: AATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110419327|gb|EC985545.1|EC985545
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|351036719|gb|FQ457432.1|FQ457432
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCACCAAAAG                         CTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110700089|gb|EE077733.1|EE077733
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110373587|gb|EC937836.1|EC937836
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|161712089|gb|FC061461.1|FC061461
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|351036543|gb|FQ457256.1|FQ457256
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110686436|gb|EE064068.1|EE064068
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|161718760|gb|FC068602.1|FC068602
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110390361|gb|EC955266.1|EC955266
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110687157|gb|EE064324.1|EE064324
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|161721701|gb|FC070466.1|FC070466
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110371939|gb|EC936075.1|EC936075
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|351024191|gb|FQ423614.1|FQ423614
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110722032|gb|EE097905.1|EE097905
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110411434|gb|EC977147.1|EC977147
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110388191|gb|EC952915.1|EC952915
EST:     AAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: AAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|161713776|gb|FC063776.1|FC063776
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|22014886|gb|BQ799920.1|BQ799920
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|71867540|gb|DT016595.1|DT016595
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110687043|gb|EE064106.1|EE064106
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110372033|gb|EC936175.1|EC936175
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|161721107|gb|FC070369.1|FC070369
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110687120|gb|EE064252.1|EE064252
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|56408248|gb|CX016500.1|CX016500
EST:     AGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: AGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
EST: gi|110701576|gb|EE079308.1|EE079308
EST:     CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAG                         CTTCCCCGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT
genomic: CCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctt ... tttttggtagCTTCCCTGGAAAAGCTGTTGGGGTGAGTTTAGGCTGCCAAGCTGCTCCTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGATGTAAAGGTTTACGCCGCGGTTCTGGAGAAACCCGGAAGTCACTTCCCCAATGCAAGCAAGTGGTACAGCTGTGTTTCTTCGCATCTCGCCAAAAGgtttctgctttctaattttaactacttttcctttttttttgtatcagtccttgttgttagtcaattcattattattttggttgaggattttgcaaatttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG