Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCACTCAGCAACCAAAAGTATAGAGAATTTAAAGAAGAATTCTCAGATGTTGGTTTGATGACTGGGGATGTCACTATTGAGCCCAATGCTTCTTGCCTGgtaggcccagttatcatttatatatttatttttttcctatttgagcctttgaaatgtttctgtattttgggttgctaaattatagttctgtttcag

Basic information

species Vitis vinifera
transcript Vv06s0009g01750.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g01750.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os12g18140.1 (Oryza sativa), 5'ss of exon 2
GGCACTCAGCAACCAAAAGTATAGAGAATTTAAAGAAGAATTCTCAGATGTTGGTTTGATGACTGGGGATGTCACTATTGAGCCCAATGCTTCTTGCCTGgta-ggcccagttatcatttatatatttatttttttcctatttgagcctttgaaatgtttctgtattttgggttgctaaattatagttctgtttcag
|||  | || ||||||||||| || ||||| |||||||| ||||| ||||| ||  | |||||||||||||| ||||||||||| ||||| |||||  ||||| ||     |||| |||  |  |  |  |    ||    || |   |||    |||| ||  || |||   ||  ||| |  ||           
GGCTTTGAGTAACCAAAAGTACAGGGAATTCAAAGAAGAGTTCTCTGATGTCGGCCTCATGACTGGGGATGTTACTATTGAGCCAAATGCATCTTGTTTGgtatggtatccttatgattctttgaaatcatcccatctatgttaaatgttt----tgttacttaatcttgatctg--aaaatgcag-----------

upper sequence: Vv06s0009g01750.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G040995_T02 (Zea mays), 5'ss of exon 2
GGCACTCAGCAACCAAAAGTATAGAGAATTTAAAGAAGAATTCTCAGATGTTGGTTTGATGACTGGGGATGTCACTATTGAGCCCAATGCTTCTTGCCTGgtaggcccagttatcatttatatatttatttttttcctatttgagcctttgaaatgtttctgtattttgggttgctaaattatagttctgtttcag
|||||| |||||||||||||| || || || |||||||| ||||| ||||||||| | ||||||||||||||||| |||||||| ||||| || || ||||||   ||   |  | |    |      | |||    |  |||  | |||   ||| ||  | | ||        |   | | | | | |      
GGCACTGAGCAACCAAAAGTACAGGGAGTTCAAAGAAGAGTTCTCTGATGTTGGTCTCATGACTGGGGATGTCACAATTGAGCCGAATGCCTCCTGTCTGgtactgccttctgccctcaccac-----tctttcaattgcttgtacattt---atgcttg-gaacttaaaaccattccctgacaatgcag------

upper sequence: Vv06s0009g01750.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G59760.1 (Arabidopsis thaliana), 5'ss of exon 2
GGCACTCAGCAACCAAAAGTATAGAGAATTTAAAGAAGAATTCTCAGATGTTGGTTTGATGACTGGGGATGTCACTATTGAGCCCAATGCTTCTTGCCTGgtaggcccagttatcatttata-tatttatttttttcctatttgagcctttgaaatgtttctgtattttgggttgctaaattatagttctgtttcag
|||||| || || || ||||| ||||| ||||||||||| || || |||||||||||||||||||||||||| ||||| || || ||||| ||||| || ||| |      || | |||| | | || | | || ||  |   |   |||| |  || |  | | || |  |||  |   ||     | ||||||||
GGCACTTAGTAATCAGAAGTACAGAGATTTTAAAGAAGAGTTTTCTGATGTTGGTTTGATGACTGGGGATGTGACTATCGATCCTAATGCCTCTTGTCTTgtaag------taccttttaaactgttcaatgttgtctcagaagtttcttttatttgctatt-tgttcttagtt-ttgtgtt----ctttgtttcag