Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGCACCCAGCTCAGCCATAATGTGGCTAAATTTATATTTGCTCTTCCAACACCAACTTCAGTGTTGGGACTTCCAATTGGACAACATATGAGTTGCAAgtaggttggttgttttggtcttgtattccattcatatacaatgctatgtgttttgtttcttcgtatgtgatacatgtatgacattattgagtgccattagattctatcatgtgataaccttttatagtttttcccaacag

Basic information

species Vitis vinifera
transcript Vv06s0009g01710.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g01710.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os05g40990.1 (Oryza sativa), 5'ss of exon 2
AACGCACCCAGCTCAGCCATAATGTGGCTAAATTTATATTTGCTCTTCCAACACCAACTTCAGTGTTGGGACTTCCAATTGGACAACATATGAGTTGCAAgtaggttggttgttttggtcttgtattccattcatatacaatgctatgtgttttgtttcttcgtatgtgatacatgtatgacattattgagtgccattagattctatcatgtgataaccttttatagtttttcccaacag
|    |  ||| |||| ||||||||||| || || | ||||||||| ||||| ||  |||| ||| |||| ||||||||||| |||||||| ||||||| || ||  |||| | |      ||| |||  | | | |   ||    | |||||   || | |  |   ||    |||   |  ||||    ||   ||  |                                       
AGAAGAGGCAGATCAGTCATAATGTGGCCAAGTTCAGATTTGCTCTACCAACCCCTGCTTCTGTGCTGGGGCTTCCAATTGGCCAACATATCAGTTGCAGgttggg-ggttatatca--tatgtcttct-tgcttctctcatatcttttgtttctcttttacaaa---gaattgtgttaaatgttatctcctgttcttgcag--------------------------------------

upper sequence: Vv06s0009g01710.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os01g59930.2 (Oryza sativa), 5'ss of exon 2
AACGCACCCAGCTCAGCCATAATGTGGCTAAATTTATATTTGCTCTTCCAACACCAACTTCAGTGTTGGGACTTCCAATTGGACAACATATGAGTTGCAAgtaggttggttgttttggtcttgtat-tccattcatatacaatgctatgtgttttgtttcttcgtatgt--gatacatgtatgacattattgagtgccattagattctatcatgtgataaccttttatagtttttcccaacag
||   |  ||  | || ||||| ||||| | ||| | ||||||||||||||| ||||| || || ||||| ||||||||||| || ||||| ||||||| ||   |||| |   |  | ||| |   |   || ||  |   |||||    |||| ||| | | ||  |  || | |||||||    ||||     |  ||||                                        
AAAAGAAGCAAATAAGTCATAACGTGGCCAGATTCAAATTTGCTCTTCCAACTCCAACCTCTGTATTGGGCCTTCCAATTGGTCAGCATATCAGTTGCAGgt---ttggat---tccgccttatgcctttctttatgaagtttgctacccttttt-tttttacataaattggaaaaatgtatg-tgctatt-----cttttag----------------------------------------

upper sequence: Vv06s0009g01710.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G133213_T01 (Zea mays), 5'ss of exon 2
AACGCACCCAGCTCAGCCATAATGTGGCTAAATTTATATTTGCTCTTCCAACACCAACTTCAGTGTTGGGACTTCCAATTGGACAACATATGAGTTGCAAgtaggttggttgttttggtcttgtattccattcatatacaatgctatgtgttttgtttcttcgtatgtgatacatgtatgacattattgagtgccattagattctatcatgtgataaccttttatagtttttcccaacag
||   |  ||  | || |||||||| || |  || |  || ||||||||||| |||||||| || ||||| |||||||| || |||||||| || |||| ||       ||| ||  | |||   |||| || || |    |  ||  |  ||| |||     ||| || |       ||   ||||  ||                                                 
AAAAGAAGCAAATAAGTCATAATGTTGCCAGGTTCAAGTTCGCTCTTCCAACTCCAACTTCTGTATTGGGCCTTCCAATCGGTCAACATATCAGCTGCAGgtt------ttgattctgcctt---ttcccttaattt-tgcttttacatcatttctttaactatatctg-tgttctcttgtttttatgcag-------------------------------------------------

upper sequence: Vv06s0009g01710.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G05640.1 (Glycine max), 5'ss of exon 2
AACGCACCCAGCTCAGCCATAATGTGGCTAAATTTATATTTGCTCTTCCAACACCAACTTCAGTGTTGGGACTTCCAATTGGACAACATATGAGTTGCAAgtaggttggttgttttggtcttgtattcca-ttcatat-acaatgctat--gtgttttgtttcttcgta----tgtgatacatgtatgacattat--tgagtgccattag--attctatcatgtgataaccttttatagtttttcccaacag-----------------------------------------------
||||||| || |||||||||||||| || |  ||   ||||| |||||| || || |  ||||||||||||||||| |||||||||||||| || |||| ||   |   ||| |||  |  | | ||||| ||||| | | |||  |||  ||| ||  | || |  ||    | |  | | | |  |||   |   |||||    | ||  | | |||||  | || ||  |  ||   |   ||     |                                               
AACGCACTCAACTCAGCCATAATGTTGCCACGTTCCGATTTGATCTTCCTACTCCTAAGTCAGTGTTGGGACTTCCTATTGGACAACATATCAGCTGCAGgtttat--attgctttatttctcttttccaattcatttgataatattattagtgcttaatgtcattttagtgctttatttcctattggaccccacaatgagtttattgagttactatatcacattatcacactcaatgaatacaccttggtgcattataatgcattattcatcttgaatgtctttggtcttctattcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110720681|gb|EE096826.1|EE096826
EST:     ACACCAACTTCAGTGTTGGGACTTCCAATTGGACAACATATGAGTTGCAA                         GGGAAAGGATAGTCTTGGTGAAGATGTTGTTAAACCATATACTCCAACCAC
genomic: ACACCAACTTCAGTGTTGGGACTTCCAATTGGACAACATATGAGTTGCAAgtaggttggt ... ttcccaacagGGGAAAGGATAGTCTTGGTGAAGATGTTGTTAAACCATATACTCCAACCAC
EST: gi|71864812|gb|DT013867.1|DT013867
EST:     ACACCAACTTCAGTGTTGGGACTTCCAATTGGACAACATATGAGTTGCAG                         GGGAAAGGATAGTCTTGGTGAAGATGTTGTTAAACCATATACTCCAACCAC
genomic: ACACCAACTTCAGTGTTGGGACTTCCAATTGGACAACATATGAGTTGCAAgtaggttggt ... ttcccaacagGGGAAAGGATAGTCTTGGTGAAGATGTTGTTAAACCATATACTCCAACCAC
EST: gi|110688836|gb|EE067844.1|EE067844
EST:     ACACCAACTTCAGTGTTGGGACTTCCAATTGGACAACATATGAGTTGCAA                         GGGAAAGGATAGTCTTGGTGAAGATGTTGTTAAACCATATACTCCAACCAC
genomic: ACACCAACTTCAGTGTTGGGACTTCCAATTGGACAACATATGAGTTGCAAgtaggttggt ... ttcccaacagGGGAAAGGATAGTCTTGGTGAAGATGTTGTTAAACCATATACTCCAACCAC
EST: gi|110718332|gb|EE095045.1|EE095045
EST:     ACACCAACTTCAGTGTTGGGACTTCCAATTGGACAACATATGAGTTGCAA                         GGGAAAGGATAGTCTTGGTGAAGATGTTGTTAAACCATATACTCCAACCAC
genomic: ACACCAACTTCAGTGTTGGGACTTCCAATTGGACAACATATGAGTTGCAAgtaggttggt ... ttcccaacagGGGAAAGGATAGTCTTGGTGAAGATGTTGTTAAACCATATACTCCAACCAC