1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGACTTGGGTAATTCAAACCTCTCTGGTCATCTGGTACCTGAACTTGGGAAGCTCAAGTATCTGCAGTATCTgtatgtttttctctttgactgtttaatgtaggaggattgtgaatccttagttttttattctatggtttgtcttgcaataatctatggtatgttgagaggg...
species | Vitis vinifera |
transcript | Vv06s0009g01210.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCTGATCATCTGGTACCTGAACTTGGGAAGCTCAAGTATCTGCAGTATCT GGAGCTTTACAAAAACCACATTCAAGGAACTATCCCTGTTGAGCTTGGCAAEST: gi|110726152|gb|EE101683.1|EE101683
genomic: TCTGGTCATCTGGTACCTGAACTTGGGAAGCTCAAGTATCTGCAGTATCTgtatgttttt ... cttcatgtagGGAGCTTTACAAAAACCACATTCAAGGAACTATCCCTGTTGAGCTTGGCAA
EST: TCTGGTCATCTGGTACCTGAACTTGGGAAGCTCAAGTATCTGCAGTATCT GGAGCTTTACAAAAACCACATTCAAGGAACTATCCCTGTTGAGCTTGGCAAEST: gi|352790557|gb|FQ478196.1|FQ478196
genomic: TCTGGTCATCTGGTACCTGAACTTGGGAAGCTCAAGTATCTGCAGTATCTgtatgttttt ... cttcatgtagGGAGCTTTACAAAAACCACATTCAAGGAACTATCCCTGTTGAGCTTGGCAA
EST: TCTGGTCATCTGGTACCTGAACTTGGGAAGCTCAAGTATCTGCAGTATCT GGAGCTTTACAAAAACCACATTCAAGGAACTATCCCTGTTGAGCTTGGCAA
genomic: TCTGGTCATCTGGTACCTGAACTTGGGAAGCTCAAGTATCTGCAGTATCTgtatgttttt ... cttcatgtagGGAGCTTTACAAAAACCACATTCAAGGAACTATCCCTGTTGAGCTTGGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACTTGGGTAATTCAAACCTCTCTGGTCATCTGGTACCTGAACTTGGGAAGCTCAAGTATCTGCAGTATCTgtatgtttttctctttgactgtttaatgtaggaggattgtgaatccttagttttttattctatggtttgtcttgcaataatctatggtatgttgagaggg
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaataa