Sequence
atgc intronic sequence ATGC exonic sequenceTGGAGGCGAAAGTAGTGCCAAACGTGGAGCTGAGCTATCCACAGCACAAAGGCAGGAGCTTCAGATGAAGAAAGCCAAGCTTGTCAACATGCTTGATGAGgtacatatatatatttttgggctccaaattttttacttcaattgggttttgataattgcaagccaaaaccatccagatatgtgttgattttgaaaaacta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g00410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os11g06020.1 (Oryza sativa), 5'ss of exon 2
TGGAGGCGAAAGTAGTGCCAAACGTGGAGCTGAGCTATCCACAGCACAAAGGCAGGAGCTTCAGATGAAGAAAGCCAAGCTTGTCAACATGCTTGATGAGgtacatatatatatttttgggctccaaatttttta--cttcaattgggttttgataattgcaagccaaaaccatccagatatgtgttgattttgaaaaacta
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CGCCAAGAGCGGCGGCGCGCCGCCGCCGCCGGAGATGTCGACGGCGGAGCGGCAGGAGCTGCAGATGAAGAAAGGAAAGCTGATTAACATGCTTGATGAGgtcagtaattaattaattaattaattaattaattgagcactgttagtttttttctttttgttttttgtgattagaaaaacgcaagtatattgcttgtatt--
upper sequence: Vv06s0009g00410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA12G10030.1 (Glycine max), 5'ss of exon 3
TGGAGGCGAAAGTAGTGCCAAACGTGGAGCTGAGCTATCCACAGCACAAAGGCAGGAGCTTCAGATGAAGAAAGCCAAGCTTGTCAACATGCTTGATGAGgtacatatatatatttttgggctccaaattttttacttcaattgggttttgataattgcaagccaaaaccatccagatatgtgttgattttgaaaaacta---
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GGAGAATAATGATCGAGCCAAACAAGGAGTTGAACTCAGCACAGCACAGAGACAAGAGCTTCAGATGAAGAAGTCCAAGCTTGTGACCATGCTCGATGAGgtatattta-acagtat--gtttataaaatatagatgcacgtaatgataaacttcccacttaatgatgctttgggatttggtattgatttccaagaatttatg
upper sequence: Vv06s0009g00410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G38910.1 (Glycine max), 5'ss of exon 2
TGGAGGCGAAAGTAGTGCCAAACGTGGAGCTGAGCTATCCACAGCACAAAGGCAGGAGCTTCAGATGAAGAAAGCCAAGCTTGTCAACATGCTTGATGAGgtacatata-tatatttttgggctccaaattttttacttcaattgggttttgataattgcaagccaaaaccatccagatatgtgttgattt-tgaaaaacta
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AGGAGAAAACAGTGCAGGGAAACAAGTGGTTGAACTCAGCACCGCTCAGAGGCAAGAGCTTCAGATGAAGAAGTCCAAGCTTGTGACCATGCTCGATGAGgtaataataataattacttattatatgcatagtgaattttggatgtgtcatg-caatattgtgttgtgtgtgggtgtgtgtgtgtatatatatgtttgatt-
upper sequence: Vv06s0009g00410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G18270.1 (Glycine max), 5'ss of exon 1
TGGAGGCGAAAGTAGTGCCAAACGTGGAGCTGAGCTATCCACAGCACAAAGGCAGGAGCTTCAGATGAAGAAAGCCAAGCTTGTCAACATGCTTGATGAGgtacatatatatatttttgggctccaaattttttacttcaattgggttttgataattgcaagccaaaaccatccagatatg-tgttgattttgaaaaacta
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TAATAATAATGATGGAGGCAAACAAGGAGTTGAACTCAGCACAGCACAGAGACAAGAGCTTCAGATGAAGAAGTCAAAACTTGTGACCATGCTAGATGAGgtatatatata-atagtatgtttataaatatacacatgcacgtaatgattaactttcctcttaatgatgcttcgggatttggtattgatttccaagaatttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110693884|gb|EE070506.1|EE070506EST: GGCAGGAGCTTCAGATGAAGAAAGCCAAGCTTGTCAACATGCTTGATGAG GTGGAGCAAAGGTACAGGCAGTACCACCAACAAATGCAAATTGTAGTTTCT
genomic: GGCAGGAGCTTCAGATGAAGAAAGCCAAGCTTGTCAACATGCTTGATGAGgtacatatat ... gaattggaagGTGGAGCAAAGGTACAGGCAGTACCACCAACAAATGCAAATTGTAGTTTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGAGGCGAAAGTAGTGCCAAACGTGGAGCTGAGCTATCCACAGCACAAAGGCAGGAGCTTCAGATGAAGAAAGCCAAGCTTGTCAACATGCTTGATGAGgtacatatatatatttttgggctccaaattttttacttcaattgggttttgataattgcaagccaaaaccatccagatatgtgttgattttgaaaaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaac