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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCATTATACATTTGGACCTCACAAAATACGCTCTAAGGAAGTTTTCTACTCCACCCATCTTTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTGgtacatttttctttttgaattttgattcttccctgagggatttcttgaataatgaggcatgtcaagagcattttattttgtttttcatgcttttttggatattgttgtcattgtgtttgaacaactgctggtaataattaccttttctgaccatgattcgtttatctttgttttgcag

Basic information

species Vitis vinifera
transcript Vv06s0004g08410.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g08410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G05590.1 (Glycine max), 5'ss of exon 1
GATCATTATACATTTGGACCTCACAAAATACGCTCTAAGGAAGTTTTCTACTCCACCCATCTTTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTGgtacatttttctttttgaattttgattcttccctgagggatttcttgaataatgaggcatgtcaagagcattttattttgtttttcat--gcttttttggatattgttgtcattgtgtttgaacaactgctggtaataattaccttttctgaccatgattcgtttatctttgttttgcag
||  | || || ||||| ||| |||| |||| |   |  ||||| |||||||||||| |||| || |  |||||||| |||||||||||  ||||||||||||       |   |   | |     || | ||| |     ||||| | |       ||| |      | ||   ||||| |||| ||    || ||  || | |   | |  |                                                                  
GAAGACTACACTTTTGGGCCTTACAAGATACACCACACTGAAGTGTTCTACTCCACCAATCTCTCTTACGCCATGGTTAACCTGCGTCCTCTTCTTCCTGgtaa---caacaaataacactgcccatcatgcctaa-----ttcttcactt------cattttgc---ctttcccttttgcttttaattgatttgttcagacaataaagccgataaa---------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71882570|gb|DT031625.1|DT031625
EST:     TTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTG                         GTCATGTGCTTATCT
genomic: TTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTGgtacattttt ... tgttttgcagGTCATATCCTT-T-T
EST: gi|110425249|gb|EC991631.1|EC991631
EST:     CTCCACCCATCTTTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTG                         GTCATGTGCTTATCT
genomic: CTCCACCCATCTTTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTGgtacattttt ... tgttttgcagGTCATATCCTT-T-T
EST: gi|71890099|gb|DT039154.1|DT039154
EST:     TTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTG                         GTCATGTGCTTATCT
genomic: TTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTGgtacattttt ... tgttttgcagGTCATATCCTT-T-T
EST: gi|349833038|gb|FQ416416.1|FQ416416
EST:     CTCCACCCATCTTTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTG                         GTCATGTGCTTATCT
genomic: CTCCACCCATCTTTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTGgtacattttt ... tgttttgcagGTCATATCCTT-T-T
EST: gi|110384285|gb|EC948713.1|EC948713
EST:     CTCCACCCATCTTTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTG                         GTCATGTGCTTATCT
genomic: CTCCACCCATCTTTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTGgtacattttt ... tgttttgcagGTCATATCCTT-T-T
EST: gi|351014264|gb|FQ434853.1|FQ434853
EST:     CTCCACCCATCTTTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTG                         GTCATGTGCTTATCT
genomic: CTCCACCCATCTTTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTGgtacattttt ... tgttttgcagGTCATATCCTT-T-T
EST: gi|351029971|gb|FQ430713.1|FQ430713
EST:     CTCCACCCATCTTTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTG                         GTCATGTGCTTATCT
genomic: CTCCACCCATCTTTCCTTTGCCATGGTCAACCTGCGTCCGGTTCTTCCTGgtacattttt ... tgttttgcagGTCATATCCTT-T-T