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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCACGATTCCATCATCCAATTCTACACTTCTTGGATTGATGTGGAACGCAAAACCTTCAACTTCATCACTGAATTCTTCACCTCAGGCACCCTCAGAGAgtaaattctgcagaattgttcattcctttcttttaaaatagtagactaattgttaacagcaactatatattctctagtacag

Basic information

species Vitis vinifera
transcript Vv06s0004g07920.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718633|gb|FC068216.1|FC068216
EST:     AAAACCTTCAACTTCATCACTGAATTCTTCACCTCAGGCACCCTCAGAGA                         ATACAGGAAGAAGTACAAAAGGGTGGACATCCGAGCTATTAAATGCTGGGC
genomic: AAAACCTTCAACTTCATCACTGAATTCTTCACCTCAGGCACCCTCAGAGAgtaaattctg ... tctagtacagATACAGGAAGAAGTACAAAAGGGTGGACATCCGAGCTATTAAATGCTGGGC
EST: gi|110698165|gb|EE075416.1|EE075416
EST:     AAAACCTTCAACTTCATCACTGAATTCTTCACCTCAGGCACCCTCAGAGA                         ATACAGGAAGAAGTACAAAAGGGTGGACATCCGAGCTATTAAATGCTGGGC
genomic: AAAACCTTCAACTTCATCACTGAATTCTTCACCTCAGGCACCCTCAGAGAgtaaattctg ... tctagtacagATACAGGAAGAAGTACAAAAGGGTGGACATCCGAGCTATTAAATGCTGGGC
EST: gi|27579538|gb|CB002233.1|CB002233
EST:     AAAACCTTCAACTTCATCACTGAATTCTTCACCTCAGGCACCCTCAGAGA                         ATACAGGAAGAAGTACAAAAGGGTGGACATCCGAGCTATTAAATGCTGGGC
genomic: AAAACCTTCAACTTCATCACTGAATTCTTCACCTCAGGCACCCTCAGAGAgtaaattctg ... tctagtacagATACAGGAAGAAGTACAAAAGGGTGGACATCCGAGCTATTAAATGCTGGGC
EST: gi|110711559|gb|EE088176.1|EE088176
EST:     AAAACCTTCAACTTCATCACTGAATTCTTCACCTCAGGCACCCTCAGAGA                         ATACAGGAAGAAGTACAAAAGGGTGGACATCCGAGCTATTAAATGCTGGGC
genomic: AAAACCTTCAACTTCATCACTGAATTCTTCACCTCAGGCACCCTCAGAGAgtaaattctg ... tctagtacagATACAGGAAGAAGTACAAAAGGGTGGACATCCGAGCTATTAAATGCTGGGC