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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGATCGATAACATAAAGTCGCAGGTGGAGAGCGTGTGCCCTGGTGTAGTCTCCTGTGCCGATATCATAGCCATTGCTGCTCGCGACTCGGTCGTGATTgtgagttcataattaactagccttttccttttacaaaatatatcatacatgactccagaattaatcattctttggcatggtttttatgaaag

Basic information

species Vitis vinifera
transcript Vv06s0004g07770.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71864984|gb|DT014039.1|DT014039
EST:     TCTCCTGTGCCGATATCATAGCCATTGCTGCTCGCGACTCGGTCGTGATT                         CTTGGAGGGCCCGACTGGGATGTCAAGCTTGGAAGGAGAGATTCCAAAACA
genomic: TCTCCTGTGCCGATATCATAGCCATTGCTGCTCGCGACTCGGTCGTGATTgtgagttcat ... tttatgaaagCTTGGAGGGCCCGACTGGGATGTCAAGCTTGGAAGGAGAGATTCCAAAACA
EST: gi|352787091|gb|FQ476124.1|FQ476124
EST:     TCTCCTGTGCCGATATCATAGCCATTGCTGCTCGCGACTCGGTCGTGATT                         CTTGGAGGGCCCGACTGGGATGTCAAGCTTGGAAGGAGAGATTCCAAAACA
genomic: TCTCCTGTGCCGATATCATAGCCATTGCTGCTCGCGACTCGGTCGTGATTgtgagttcat ... tttatgaaagCTTGGAGGGCCCGACTGGGATGTCAAGCTTGGAAGGAGAGATTCCAAAACA
EST: gi|352794906|gb|FQ477016.1|FQ477016
EST:     TCTCCTGTGCCGATATCATANCCATTGCTGCTCGCGACTCGGTCGTGATT                         CTTGGAGGGCCCGACTGGGATGTCCAGCTTGGAAGGAGAGATTTCAAAACA
genomic: TCTCCTGTGCCGATATCATAGCCATTGCTGCTCGCGACTCGGTCGTGATTgtgagttcat ... tttatgaaagCTTGGAGGGCCCGACTGGGATGTCAAGCTTGGAAGGAGAGATTCCAAAACA
EST: gi|352787014|gb|FQ476047.1|FQ476047
EST:     TCTCCTGTGCCGATATCATAGCCATTGCTGCTCGCGACTCGGTCGTGATT                         CTTGGAGGGCCCGACTGGGATGTCAAGCTTGGAAGGAGAGATTCCAAAACA
genomic: TCTCCTGTGCCGATATCATAGCCATTGCTGCTCGCGACTCGGTCGTGATTgtgagttcat ... tttatgaaagCTTGGAGGGCCCGACTGGGATGTCAAGCTTGGAAGGAGAGATTCCAAAACA
EST: gi|294964613|gb|GW838416.1|GW838416
EST:     TCTCCTGTGCCGATATCATAGCCATTGCTGCTCGCGACTCGGTCGTGATT                         CTTGGAGGGCCCGACTGGGATGTCAAGCTTGGAAGGAGAGATT
genomic: TCTCCTGTGCCGATATCATAGCCATTGCTGCTCGCGACTCGGTCGTGATTgtgagttcat ... tttatgaaagCTTGGAGGGCCCGACTGGGATGTCAAGCTTGGAAGGAGAGATT
EST: gi|110419121|gb|EC985323.1|EC985323
EST:     TCTCCTGTGCCGATATCATAGCCATTGCTGCTCGCGACTCGGTCGTGATT                         CTTGGAGGGCCCGACTGGGATGTCAAGCTTGGAAGGAGAGATTCCAAAACA
genomic: TCTCCTGTGCCGATATCATAGCCATTGCTGCTCGCGACTCGGTCGTGATTgtgagttcat ... tttatgaaagCTTGGAGGGCCCGACTGGGATGTCAAGCTTGGAAGGAGAGATTCCAAAACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTGATCGATAACATAAAGTCGCAGGTGGAGAGCGTGTGCCCTGGTGTAGTCTCCTGTGCCGATATCATAGCCATTGCTGCTCGCGACTCGGTCGTGATTgtgagttcataattaactagccttttccttttacaaaatatatcatacatgactccagaattaatcattctttggcatggtttttatgaaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT