1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGTGCTCAAGCTGTTGGAATGGGTTCAGAGGCTCAAAGTGTGCCAGCTGCTGCGGACTTGTATAAGAAAGCAAATGACATTCTCGGgtagggtcaataatttttcttttcgttcttttgatgctttatgctatataatctaaacctcggctggggacaatagtgacaatgtgctattttggaagtatgtttttcaatttacacagggtagttgatttgagtaacgtgatgttctgttgcatgcag
species | Vitis vinifera |
transcript | Vv06s0004g07380.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGTGTGCCAGCTGCTGCGGACTTGTATAAGAAAGCAAATGACATTCTCGG ATTTGACCTTCTGGATGTTTGCATCAATGGACCAAAAGAAAAGCTAGATTCEST: gi|161714260|gb|FC063524.1|FC063524
genomic: AGTGTGCCAGCTGCTGCGGACTTGTATAAGAAAGCAAATGACATTCTCGGgtagggtcaa ... ttgcatgcagATTTGACCTTCTGGATGTTTGCATCAATGGACCAAAAGAAAAGCTAGATTC
EST: AGTGTGCCAGCTGCTGCGGACTTGTATAAGAAAGCAAATGACATTCTCGG ATTTGACCTTCTGGATGTTTGCATCAATGGACCAAAAGAAAAGCTAGATTCEST: gi|30128526|gb|CB913865.1|CB913865
genomic: AGTGTGCCAGCTGCTGCGGACTTGTATAAGAAAGCAAATGACATTCTCGGgtagggtcaa ... ttgcatgcagATTTGACCTTCTGGATGTTTGCATCAATGGACCAAAAGAAAAGCTAGATTC
EST: AGTGTGCCAGCTGCTGCGGACTTGTATAAGAAAGCAAATGACATTCTCGG ATTTGACCTTCTGGATGTTTGCATCAATGGACCAAAAGAAAAGCTAGATTCEST: gi|161713818|gb|FC063453.1|FC063453
genomic: AGTGTGCCAGCTGCTGCGGACTTGTATAAGAAAGCAAATGACATTCTCGGgtagggtcaa ... ttgcatgcagATTTGACCTTCTGGATGTTTGCATCAATGGACCAAAAGAAAAGCTAGATTC
EST: AGTGTGCCAGCTGCTGCGGACTTGTATAAGAAAGCAAATGACATTCTTGG ATTTGACCTTCTGGATGTTTGCATCAATGGACCAAAAGAAAAGCTAGATTCEST: gi|71872032|gb|DT021087.1|DT021087
genomic: AGTGTGCCAGCTGCTGCGGACTTGTATAAGAAAGCAAATGACATTCTCGGgtagggtcaa ... ttgcatgcagATTTGACCTTCTGGATGTTTGCATCAATGGACCAAAAGAAAAGCTAGATTC
EST: AGTGTGCCAGCTGCTGCGGACTTGTATAAGAAAGCAAATGACATTCTTGG ATTTGACCTTCTGGATGTTTGCATCAATGGACCAAAAGAAAAGCTAGATTC
genomic: AGTGTGCCAGCTGCTGCGGACTTGTATAAGAAAGCAAATGACATTCTCGGgtagggtcaa ... ttgcatgcagATTTGACCTTCTGGATGTTTGCATCAATGGACCAAAAGAAAAGCTAGATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGCTCAAGCTGTTGGAATGGGTTCAGAGGCTCAAAGTGTGCCAGCTGCTGCGGACTTGTATAAGAAAGCAAATGACATTCTCGGgtagggtcaataatttttcttttcgttcttttgatgctttatgctatataatctaaacctcggctggggacaatagtgacaatgtgctattttggaagtatgtttttcaatttacacagggtagttgatttgagtaacgtgatgttctgttgcatgcag
- - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA