Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACGAGGGTTAAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTTgtaagtgataagcttttctcagtgtgtttccattacttaataatgttagaccctcgggttttacttgctttgctttaatgtcttataatctgtcatacag

Basic information

species Vitis vinifera
transcript Vv06s0004g07150.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g07150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA01G31270.1 (Glycine max), 5'ss of exon 2
GCACGAGGGTTAAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTTgtaagtgataagctt----ttctcagtgtgtttccattacttaataatgttagaccctcgggttttacttgctttgctttaatgtcttataatctgtcatacag
||  ||||||||||||||||  |||||||||| ||||| ||||| ||||||||||||||||| ||||| ||||| |||||| ||      ||     || ||  ||   ||   ||||| ||   | || |    |    ||| |  |  | | ||    || | |    |||||       
GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGATGCTTGACAAGCTTGGTGGTGCCTTTgtatgtacagtactcacaattgtcgatgatattattttactcaaatttatttgtaattttcatttgaactcatgtactcatttggcctg-gctctgtag-----

upper sequence: Vv06s0004g07150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA03G06440.1 (Glycine max), 5'ss of exon 2
GCACGAGGGTTAAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTTgtaagtgataagcttttctcagt--gtgtttccattacttaataatgttag-accctcgggttttacttgctttgctttaatgtcttataatctgtcatacag
||  ||||||| |||||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| || || |||||| ||      ||       ||   || |   |||  | | |  | || | |   |  | ||  |||   ||||| |   ||| |                 
GCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGGATGCTTGACAAGCTTGGTGGGGCCTTTgtatgtacagtactcacagttgttgatgatattatttgtcatttttatttgtaattttcgtttgaactcattttgcctggctgtgtag---------------

upper sequence: Vv06s0004g07150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S39_422V6.1 (Physcomitrella patens), 5'ss of exon 1
----------------------GCACGAGGGTTAAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTTgtaagtgataagcttttctcagtgtgtttccattacttaataatgttagaccctcgggttttacttgctttgctttaatgtcttataatctgtcatacag
                      || || ||  ||||||| ||||||||| | || |||||||| | |||||||||||| |||||  | || |||||||| ||||||  |    | |   || | | ||    ||  |   |     |   |   | | |   |   |     |   ||  ||     |  | |  |    
TGATGTCACACTTCTTTGGCAGGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttgcattatgaccaatctcttcgtcttgttgtttcccacttttctgactgttaaaatgggtgcatcagaaacctcaccagaattatggttttc

upper sequence: Vv06s0004g07150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S39_422V6.3 (Physcomitrella patens), 5'ss of exon 2
GCACGAGGGTTAAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTTgtaagtgat-----------aagcttttctcagtgt-gtttccattacttaataatgttagaccctcgggttttacttgctttgctttaatgtcttataatctgtcatacag------------------------------------------------------------------------------------------
|| || ||  ||||||| ||||||||| | || |||||||| | |||||||||||| |||||  | || |||||||| ||||||  |           || || |||    ||| ||||||     ||   | ||||| |     | |  | |    | |  |   ||| | |  |  ||  |   |  |                                                                                          
GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttgcattatgaccaatctcttcgtcttgttgtttcccacttttctgactgttaaaatgg-gtgcatcagaaacctcaccagaat-tatggttttcattggcatgggaattagatgatgtattggtttgaatgtgacacccttcaaagggagaataccgtcaccacattgatccaggaattatatcatgattctag

upper sequence: Vv06s0004g07150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 2
GCACGAGGGTTAAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTTgtaagtgataagcttttctcagtgtgtttccattacttaataatgttagaccctcgggttttacttgctttgctttaatgtcttataatctgtcatacag----
|| || || || ||||| |||||||||||||| ||||| || | ||| ||||||||||||||  | || ||||| |||||||||  ||    || ||   | | |   ||    | |||  |  |       ||  |||  ||  || | ||      |   |   || |||  |  |    
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagttttacatcttgct---tttatactcaacgttcaatcgtcatgctagtacgcatttctctgactat-ctcagggattcgaatgtcagtctcagcgaatt

upper sequence: Vv06s0004g07150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S39_422V6.2 (Physcomitrella patens), 5'ss of exon 2
GCACGAGGGTTAAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTTgtaagtgataagcttttctcagtgtgtttccattacttaataatgttagaccctcgggttttacttgctttgctttaatgtcttataatctgtcatacag
|| || ||  ||||||| ||||||||| | || |||||||| | |||||||||||| |||||  | || |||||||| ||||||  |    | |   || | | ||    ||  |   |     |   |   | | |   |   |     |   ||  ||     |  | |  |    
GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttgcattatgaccaatctcttcgtcttgttgtttcccacttttctgactgttaaaatgggtgcatcagaaacctcaccagaattatggttttc

upper sequence: Vv06s0004g07150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S81_172V6.1 (Physcomitrella patens), 5'ss of exon 2
GCACGAGGGTTAAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTTgtaagtgataagctttt---ctcagtgtgtttccattacttaataatgttagaccctcgggttttacttgctttgctttaatgtcttataatctgtcatacag
|| || || || ||||| |||||||||||||| ||||| || |||||||||||||| |||||| | || || || ||||| |||  |     |||   || | |  || |   |  |||  |  || |      | ||     ||  | ||        || |   | |  | ||  |   
GCTCGTGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAATTGGGTGGCGCCTTTgtgagttcttttactttgacctgaattggtgtttctggcttcgt--tgatctgtaataggaacgcacagggttcctggagctgcccccttagttttcgaagt-

upper sequence: Vv06s0004g07150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 2
GCACGAGGGTTAAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTTgtaagtgataagcttttctcagtgtgtttccattacttaataatgttagaccctcgggttttacttgctttgctttaatgtcttataatctgtcatacag--
|| || || || ||||| |||||||||||||| ||||| || |||||||||||||||||||| || || || || || || |||   |   |   || | |   |  | ||   ||   |  |  ||       |  | || | ||  || |  |  | ||| | |  ||  |       
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagtaccattttgaactgaattcatacctat-gtttgtgagcggaaggtggcttgtatctagt-gcactgttagataggcttcttaaatgaaacttttgc

upper sequence: Vv06s0004g07150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
GCACGAGGGTTAAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTTgtaagtgataagctttt----ctcagtgtgtttccattacttaataatgttagaccctcgggttttacttgctttgcttt--aatgtcttata-atctgtcatacag
|| || || || ||||| ||| |||||||||| ||||| || ||||||||||||||||||||  | || ||||| || || |||    |||  ||      |    | | ||     | | ||  | | | | |||    || ||  ||   | || |  ||||  |     | ||  | |    
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcctagcccttgacttcccacctatctctgcatcctcattttttaaaatcctt---ttataggtggcattctgtggaatgaatcgcccacctacctt----

upper sequence: Vv06s0004g07150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S38_194V6.1 (Physcomitrella patens), 5'ss of exon 2
GCACGAGGGTTAAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTTgtaagtgataagcttttctcagtgt-gtttccattact--taataatgttagaccctcgggttttacttgctttgctttaatgtcttataatctgtcatacag
|| || || || ||||| |||||||||||||| ||||| || |  |||||||||||||||||  | || ||||| || ||||||  | |  ||  |  | | | | |     || |  || |  |||      |  | |||    |    ||   ||  |  |  | | ||| |   ||  
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtaagttctcacgttgacctaatttcgctgatgctagtactatttgtgtcgacgtcgtgagttaggttgtggttatatttttacccga-attctcttcgac--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110702679|gb|EE078871.1|EE078871
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTT                         GCTCCCAAGCCATCTTCTGGACCTCATAAGTCAAGGGAGTGCTTGCCCTTG
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTTgtaagtgata ... tgtcatacagGCTCCCAAGCCATCTTCTGGACCTCATAAGTCAAGGGAGTGCTTGCCCTTG
EST: gi|30296893|gb|CB973687.1|CB973687
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTT                         GCTCCCAAGCCATCTTCTGGACCTCATAAGTCAAGGGAGTGCTTGCCCTTG
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTTgtaagtgata ... tgtcatacagGCTCCCAAGCCATCTTCTGGACCTCATAAGTCAAGGGAGTGCTTGCCCTTG
EST: gi|110701173|gb|EE078481.1|EE078481
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTT                         GCTCCCAAGCCATCTTCTGGACCTCATAAGTCAAGGGAGTGCTTGCCCTTG
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTTgtaagtgata ... tgtcatacagGCTCCCAAGCCATCTTCTGGACCTCATAAGTCAAGGGAGTGCTTGCCCTTG
EST: gi|33406463|gb|CF212090.1|CF212090
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTT                         GCTCCCAAGCCATCTTCTGGACCTCATAAGTCAAGGGAGTGCTTGCCCTTG
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTTgtaagtgata ... tgtcatacagGCTCCCAAGCCATCTTCTGGACCTCATAAGTCAAGGGAGTGCTTGCCCTTG
EST: gi|110688373|gb|EE066853.1|EE066853
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTT                         GCTCCCAAGCCATCTTCTGGACCTCATAAGTCAAGGGAGTGCTTGCCCTTG
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTTgtaagtgata ... tgtcatacagGCTCCCAAGCCATCTTCTGGACCTCATAAGTCAAGGGAGTGCTTGCCCTTG
EST: gi|110700067|gb|EE077679.1|EE077679
EST:     GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTT                         GCTCCCAAGCCATCTTCTGGACCTCATAAGTCAAGGGAGTGCTTGCCCTTG
genomic: GGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTTgtaagtgata ... tgtcatacagGCTCCCAAGCCATCTTCTGGACCTCATAAGTCAAGGGAGTGCTTGCCCTTG