1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGAGGGTTCTGGCAGATGGCATGACGTTGCGTGAGTCGGAGATCACGGATGGGGCTAAAGTTATGCTGATGGCTTCTCAGGGCTTGCATCAAGGGgtatcttcattgttttttttttttcttttttcttttttatttctttttctgtttcttggcattacgaaatttgaatagaattgaattgggtgtttggttc...
species | Vitis vinifera |
transcript | Vv06s0004g07050.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGGATGGGGCTAAAGTTATGCTGATGGCTTCTCAGGGCTTGCATCAAGGG GGCGGTCCAATCTTGAAGGAAGCTCCAACCCGTCCCATTTTGAGGGAAGCAEST: gi|30322614|gb|CD005876.1|CD005876
genomic: CGGATGGGGCTAAAGTTATGCTGATGGCTTCTCAGGGCTTGCATCAAGGGgtatcttcat ... gtttgaacagGGCGGTCCAATCTTGAAGGAAGCTCCAACCCGTCCCATTTTGAGGGAAGCA
EST: CGGATGGGGCTAAGGTTATGCTGATGGCTTCTCAGGGCTTACATCAAGGG GGCGGTCCAATCTTGAAGGAAGCTCCAACCCGTCCCATTTTGAGGGAAACAEST: gi|37189688|gb|CF609037.1|CF609037
genomic: CGGATGGGGCTAAAGTTATGCTGATGGCTTCTCAGGGCTTGCATCAAGGGgtatcttcat ... gtttgaacagGGCGGTCCAATCTTGAAGGAAGCTCCAACCCGTCCCATTTTGAGGGAAGCA
EST: CGGATGGGGCTAAGGTTATGCTGATGGCTTCTCAGGGCTTACACCAAGGG GGCGGTCCAATCTTGAAGGAAGCTCCAACCCGTCCCATTTTGAGGGAAACAEST: gi|30326528|gb|CD009790.1|CD009790
genomic: CGGATGGGGCTAAAGTTATGCTGATGGCTTCTCAGGGCTTGCATCAAGGGgtatcttcat ... gtttgaacagGGCGGTCCAATCTTGAAGGAAGCTCCAACCCGTCCCATTTTGAGGGAAGCA
EST: CGGATGGGGCTAAGGTTATGCTGATGGCTTCTCAGGGCTTACATCAAGGG GGCGGTCCAATCTTGAAGGAAGCTCCAACCCGTCCCATTTTGAGGGAAACAEST: gi|30325613|gb|CD008875.1|CD008875
genomic: CGGATGGGGCTAAAGTTATGCTGATGGCTTCTCAGGGCTTGCATCAAGGGgtatcttcat ... gtttgaacagGGCGGTCCAATCTTGAAGGAAGCTCCAACCCGTCCCATTTTGAGGGAAGCA
EST: CGGATGGGGCTAAGGTTATGCTGATGGCTTCTCAGGGCTTACATCAAGGG GGCGGTCCAATCTTGAAGGAAGCTCCAACCCGTCCCATTTTGAGGGAAACA
genomic: CGGATGGGGCTAAAGTTATGCTGATGGCTTCTCAGGGCTTGCATCAAGGGgtatcttcat ... gtttgaacagGGCGGTCCAATCTTGAAGGAAGCTCCAACCCGTCCCATTTTGAGGGAAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGGTTCTGGCAGATGGCATGACGTTGCGTGAGTCGGAGATCACGGATGGGGCTAAAGTTATGCTGATGGCTTCTCAGGGCTTGCATCAAGGGgtatcttcattgttttttttttttcttttttcttttttatttctttttctgtttcttggcattacgaaatttgaatagaattgaattgggtgtttggttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataga