Sequence
atgc intronic sequence ATGC exonic sequenceCTTGCGATGGAGCGTGAATCGACGTCAATGTGGGAATTGAGTTTTGTTGTTCCGCCTAACCACGgtaatggtattttggtttgaacgcttgtttggttggtgagaaagtgacggaacgagaaggaattgaaattttgagtgttttgttttccggtggttttgtt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G27870.1 (Glycine max), 5'ss of exon 2
CTTGCGATGGAGCGTGAATCGACGTCAATGTGGGAATTGAGTTTTGTTGTTCCGCCTAACCACGgtaatggtattttggtttgaacgcttgtttggttggtgagaaagtgacggaacgagaaggaattgaaattttgagt--gttttgttttccggtggttttgtt---
||| |||||||| ||||||| ||||||||||||| | || |||||||| || ||||| |||||||||| |||| ||| | || | | | | | | | | ||| |||||| | | | || ||| | | | |
CTTTTCATGGAGCGGGAATCGATGTCAATGTGGGAACTTAGCTTTGTTGTCCCACCTAATCACGgtaatgcc-ttttacttttttggtttttgtttccaattttttttttcctattcaaata----ttgcaatttttaattagcttaatttctatgcacgatcgctaac
upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 2
CTTGCGATGGAGCGTGAATCGACGTCAATGTGGGAATTGAGTTTTGTTGTTCCGCCTAACCACGgtaatggtattttggtttgaacgcttgttt---ggttggtgagaaagtgacggaacgagaagga-attgaaattttgagtgttttgttttccggtggttttgtt
||| |||||||| |||||| ||||||||||||| | || |||||||| || ||||| |||||||||| ||| ||| ||||| |||| || | | | | ||| |||||| | || | || | ||
CTTTTCATGGAGCGGGAATCGGTGTCAATGTGGGAACTTAGCTTTGTTGTCCCACCTAATCACGgtaatgccttttactttttggtttgtgtttccaagttgttgtttttttcttcttcctattcaaatgttgcaatttttaatgagcttaatttctatgcacg----
upper sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA14G37520.3 (Glycine max), 5'ss of exon 2
CTTGCGATGGAGCGTGAATCGACGTCAATGTGGGAATTGAGTTTTGTTGTTCCGCCTAACCACGgtaatggtattttg---gtttgaa---cgcttgtttggttggtgagaaagtgacggaa------cgagaaggaattgaaattttgagtgttttgttttccggtggttttgtt
||| | ||||| || ||||| ||||| ||||||| ||||| ||||||||||| ||||| |||||||||| | | | | |||| || | || || | ||||| | || | | | || | |||| |||| ||||| |
CTTTCTATGGAACGGGAATCAGCGTCAGTGTGGGAGTTGAGCTTTGTTGTTCCACCTAATCACGgtaatgctttctcatatgcttgatgtttgccttttctttttaggttaaagttatataatttctgcaaaacagagatttttttttaagtgcaaagttttac------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352768929|gb|FQ468120.1|FQ468120EST: TGAATCGACGTCAATGTGGGAATTGAGTTTTGTTGTTCCGCCTAACCACG AAACTTTGGACTTCAAGTTCCTTTTGAAGCCAAAGTACAGTAACACACCTT
genomic: TGAATCGACGTCAATGTGGGAATTGAGTTTTGTTGTTCCGCCTAACCACGgtaatggtat ... ttgaatttagAAACTTTGGACTTCAAGTTCCTTTTGAAGCCAAAGTACAGTAACACACCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTGCGATGGAGCGTGAATCGACGTCAATGTGGGAATTGAGTTTTGTTGTTCCGCCTAACCACGgtaatggtattttggtttgaacgcttgtttggttggtgagaaagtgacggaacgagaaggaattgaaattttgagtgttttgttttccggtggttttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaggaat