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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATAGCAGCTATATACTTGGACAGATGGGTGGTTTGGCCACTCTACTGGGCTGCCCAGGGAACAATGTTCTGGGCCCTGTTTGTTCTTGGACATGACTGgtaatcacatggtctttacactttctgcttggttgctgagaaatggtagtaaaagaaaagaaagcaaaacttgaaatcctacttcttcagtttctttcagtaacgtaatataattttactttgcttcttttgttgagtgcttttggcaatgaacttgaatgtcctttcttgatttttattttttgaag

Basic information

species Vitis vinifera
transcript Vv06s0004g06720.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g06720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G354558_T01 (Zea mays), 5'ss of exon 1
CTATAGCAGCTATATACTTGGACAGATGGGTGGTTTGGCCACTCTACTGGGCTGCCCAGGGAACAATGTTCTGGGCCCTGTTTGTTCTTGGACATGACTGgtaatcacat-ggtct---ttacactttctgcttggttgc--tgagaaatggtagtaaaagaaaagaaagcaaaacttgaaatcctacttcttcagtttctttcagta-acgtaatataattttactttgcttcttttgttgagtgcttttggcaatgaacttgaatgtcctttcttgatttttattttttgaag
     || ||      | ||||||| |||| ||| ||||| || |||||||| || ||||| || ||||||||||| || || || || ||||| ||||||||   || | | |||   || | | || || || |||    |       |||     |   || ||   | |||     |   | ||    |    |  | |   |  ||| |                                                                                 
GCGCGGCGGCGGCGGGCATGGACAGTTGGGCGGTGTGGCCGCTGTACTGGGCGGCGCAGGGGACCATGTTCTGGGCGCTCTTCGTGCTGGGACACGACTGgtacgtacgtcgatctctcttcctccttttgttttgttttcttttctttcggttacgtatacaacgacgacgaaatgacgacgacgaccatgttgcatgatgttgatgcacgcag--------------------------------------------------------------------------------

upper sequence: Vv06s0004g06720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA14G37350.2 (Glycine max), 5'ss of exon 1
CTATAGCAGCTATATACTTGGACAGATGGGTGGTTTGGCCACTCTACTGGGCTGCCCAGGGAACAATGTTCTGGGCCCTGTTTGTTCTTGGACATGACTGgtaatcacatggtctttacactttctgcttggttgctgagaaatggtagtaaaagaaaagaaagcaaaacttgaaatcctacttcttcagtttctttcagtaacgtaatataattttactttgcttcttttgttgagtgcttttggcaatgaacttgaatg-tcctttcttgatttttattttttgaag
     || || |   ||||  |||  ||| |  | |||| | |||| ||| |    || ||||||||||||||||| |||||||||||||||||||| ||||||| |  |  | | |     |  | |||  ||| |   | |||    | | |          ||   |||    |  | | |      |||| ||  |   | | | | || || | ||||     ||| ||  ||  |||||   ||    |  | || | | ||||| |  || | ||    |  
TGGCTGCTGCAAGTCACTTCAACAACTGGCTTCTCTGGCTAATCTATTGGCCCATTCAAGGAACAATGTTCTGGGCTCTGTTTGTTCTTGGACATGATTGgtaattaattaatttgt-----tgttacttttttgttataatatgaatctcaca----------cactgctttg--ttatgcctacctcatttcatttgg---ctttagacaacttaaatttgagatctttattatgt-tttttgcttatatggtaaagtgattcattcttcacattgaattgaacag-

upper sequence: Vv06s0004g06720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G06950.1 (Glycine max), 5'ss of exon 1
CTATAGCAGCTATATACTTGGACAGATGGGTGGTTTGGCCACTCTACTGGGCTGCCCAGGGAACAATGTTCTGGGCCCTGTTTGTTCTTGGACATGACTGgtaatcacatggtctttacactttctgcttggttgctgagaaatggtagtaaaagaaaagaaagcaaaacttgaaatcctacttcttcagtttctttcagtaacgtaatataatt---ttactttgcttcttttgttgagtgct--tttggcaatgaacttgaatgtcctttcttgatttttattttttgaag
     ||||| ||   |||  | || ||| |  | ||||||||||| ||| |||| || || |||||||| ||||| || ||||||||||||||||| ||||||  | ||  |  |||||  || |  |    || |  |  ||| |  |    |         ||     |||     || |  ||   ||||  |  || | | |  ||  ||   | |  |    | |  || ||||| ||  ||||         | |||                             
TAGCTGCAGCAATCGGCTTCAATAGCTGGTTCTTCTGGCCACTCTATTGGCCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGgtaacta-attattattacaaattgttatgttatgttatgttatgttgttgt--gcctttttctcag----tgatgctttagtcatttcatttcacttggttatgcatgattgttcgttcatatgttctgtcatggtgagttctaatttgattgatgcatggaacag--------------------------

upper sequence: Vv06s0004g06720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G39230.1 (Glycine max), 5'ss of exon 1
CTATAGCAGCTATATACTTGGACAGATGGGTGGTTTGGCCACTCTACTGGGCTGCCCAGGGAACAATGTTCTGGGCCCTGTTTGTTCTTGGACATGACTGgtaatcac----atggtctttacactttctgcttggttgctgagaaatggtagtaaaagaaaagaaagcaaaacttgaaatcctacttcttcagtttctttcagtaacgtaatataattttactttgcttcttttgttgagtgcttttggcaatgaacttgaatgtcctttcttgattttt-attttttgaag-------
     ||||| ||  |||| ||||  ||| |  | |||| | |||| ||  |    || || |||||||||||||| || ||||||||||||||||| ||||||| |      || |  |||| |||| |  ||  ||  ||   | || ||  ||    | | |  |      ||       | |||||||| ||   || ||      ||  ||| |||    |  || || ||||   ||||| |     | || |      || ||  || ||| || |||  |||||        
TGGCTGCAGCAATTCACTTCGACAACTGGCTTCTCTGGCTAATCTATTGCCCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTGgtaataatttttgtgtttcttactcttttttttttttttttgttta-tgatatgaatctcacacattgttctg-ttatgtcatttcttcttcatttggctttag----acaacttaaatttgagatctttattatgtttt-tgcttata-tggtaaagtgattcttcattatttcattcttcattgattgaattgaacag

upper sequence: Vv06s0004g06720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G27190.1 (Glycine max), 5'ss of exon 1
CTATAGCAGCTATATACTTGGACAGATGGGTGGTTTGGCCACTCTACTGGGCTGCCCAGGGAACAATGTTCTGGGCCCTGTTTGTTCTTGGACATGACTGgtaatcacatggtctttacactttctgcttggttgctgagaaatggtagtaaaagaaaagaaagcaaaacttgaaatcctacttcttcagtttctttcagtaacgtaatataattttactttgcttcttttgttgagtgcttttggcaatgaacttgaatgtcctttcttgatttttattttttgaag
     ||||| ||   |||  | || ||| |  | ||||||| ||| ||| |||| || || |||||||| ||||| || ||||||||||||||||| ||||||  |  |  |  |||||  || || |  ||   || |   |                  || ||  |||        ||||| |   ||  ||  |  |||  |   || || |                                                                       
TAGCTGCAGCAATTGGCTTCAATAGCTGGCTCTTCTGGCCACCCTATTGGTCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGgtaactaatttattattacaaattatgttatgtgattgtgccttttctc-------------agtaatgcttag----tcacttcattttttgtttcgatcaacaaatgttagttat-----------------------------------------------------------------------

upper sequence: Vv06s0004g06720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ23113 (Selaginella moellendorffii), 5'ss of exon 1
CTATAGCAGCTATATACTTGGACAGATGGGTGGTTTGGCCACTCTACTGGGCTGCCCAGGGAACAATGTTCTGGGCCCTGTTTGTTCTTGGACATGACTGgtaatcacatggtcttt--acactttctgcttggttgctgagaaatggtagtaaaagaaaagaaagcaaaacttgaaatcctacttcttcagtttctttcagtaacgtaatataattttactttgcttcttttgttgagtgcttttggcaatgaacttgaatgtcctttcttgatttttattttttgaag
||   |  |||   |||||| | |  ||| | || ||||||||||||||||||||||| || || ||||||||||| || ||||| || || ||||||||||||     |  |||    | |  || |  ||| || ||      |    ||    ||  ||                                                                                                                                
CTGCTGGTGCTGCTTACTTGAATAATTGGCTCGTCTGGCCACTCTACTGGGCTGCCCAAGGGACGATGTTCTGGGCTCTCTTTGTGCTCGGCCATGACTGgtaagtttttcttctcccaaaaacttgtttttgctttctcgttcttacgcgtctttgatcag--------------------------------------------------------------------------------------------------------------------------------

upper sequence: Vv06s0004g06720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ20170 (Selaginella moellendorffii), 5'ss of exon 1
CTATAGCAGCTATATACTTGGACAGATGGGTGGTTTGGCCACTCTACTGGGCTGCCCAGGGAACAATGTTCTGGGCCCTGTTTGTTCTTGGACATGACTGgtaatcacatggtctttacactttctgcttggttgctgagaaatggtagtaaaagaaaagaaagcaaaacttgaaatcctacttcttcagtttctttcagtaacgtaatataattttactttgcttcttttgttgagtgcttttggcaatgaacttgaatgtcctttcttgatttttattttttgaag
||   |  |||   |||||| | |  ||| | || ||||||||||||||||||||||| || || ||||||||||| || ||||| || || ||||||||||||     |  |||     |  | |  ||  || ||      |    ||    ||  ||                                                                                                                                
CTGCTGGTGCTGCTTACTTGAATAATTGGCTCGTCTGGCCACTCTACTGGGCTGCCCAAGGCACGATGTTCTGGGCTCTCTTTGTGCTCGGCCATGACTGgtaagtttttc-tctcccagcaatgttttttctttctcgatcttacgcgtctttgatcag--------------------------------------------------------------------------------------------------------------------------------