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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTATGATATCTGAGAAATGGTGTTGCAGAAGAGGTTAGATTACGGATTTAATGGCTATCAGGTCCCTGCCACTCCCCGAGCTACCAGATCGGCAAGGgtatatagattctaccattcgtagttagcgttgtttcttttttatttctatctgaaacactgacatgtgtttaattatatttttacttgttttag

Basic information

species Vitis vinifera
transcript Vv06s0004g04940.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g04940.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G14760.2 (Glycine max), 5'ss of exon 2
TTGGTATGATATCTGAGAAATGGTGTTGCAGAAGAGGTTAGATTACGGATTTAATGGCTATCAGGTCCCTGCCACTCCCCGAGCTACCAGATCGGCAAGGgtatatag------attctaccattcgtagttagc--gttgtt--tcttttttatttctatctgaaacac--tgaca----tgtgtttaattatattttta---cttgttttag--
|||| ||| |  || ||| ||||| |||||||| |||||||| ||||||||||||||||||||||  || ||||  || |||||| || ||||  | |||||| |||        |||| |   || |   | ||  ||| ||  |   | | | ||   |  || |     ||| |    | ||| ||||||| || |||     | |  |||  
TTGGCATGGTTCCTAAGATATGGTATTGCAGAAAAGGTTAGAGTACGGATTTAATGGCTATCAGGCTCCGGCCATGCCGCGAGCTTCCCGATCAACTAGGgtaaatatcaatatgttctgcttctcatgtgtggctggttattaattactatcaatttgcttagagatttcatgaaaacaatttgtataattattttgttaaaatgtttcctagag

upper sequence: Vv06s0004g04940.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G14760.1 (Glycine max), 5'ss of exon 2
TTGGTATGATATCTGAGAAATGGTGTTGCAGAAGAGGTTAGATTACGGATTTAATGGCTATCAGGTCCCTGCCACTCCCCGAGCTACCAGATCGGCAAGGgtatata------gattctaccattcgtagttagc--gttgtt--tcttttttatttctatctgaaa---cactgacatg---tgtttaattatattttt---acttgttttag
|||| ||| |  || ||| ||||| |||||||| |||||||| ||||||||||||||||||||||  || ||||  || |||||| || ||||  | |||||| |||        |||| |   || |   | ||  ||| ||  |   | | | ||   |  || |   ||   | |     ||| ||||||| || ||   |  | |  |||
TTGGCATGGTTCCTAAGATATGGTATTGCAGAAAAGGTTAGAGTACGGATTTAATGGCTATCAGGCTCCGGCCATGCCGCGAGCTTCCCGATCAACTAGGgtaaatatcaatatgttctgcttctcatgtgtggctggttattaattactatcaatttgcttagagatttcatgaaaacaatttgtataattattttgttaaaatgtttcctag

upper sequence: Vv06s0004g04940.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G14760.4 (Glycine max), 5'ss of exon 1
TTGGTATGATATCTGAGAAATGGTGTTGCAGAAGAGGTTAGATTACGGATTTAATGGCTATCAGGTCCCTGCCACTCCCCGAGCTACCAGATCGGCAAGGgta------tatagattctaccattcgtagttagc--gttgtt--tcttttttatttctatctgaaacac--tgaca----tgtgtttaattatattttta---cttgttttag
                   ||||| |||||||| |||||||| ||||||||||||||||||||||  || ||||  || |||||| || ||||  | ||||||       |||  |||| |   || |   | ||  ||| ||  |   | | | ||   |  || |     ||| |    | ||| ||||||| || |||     | |  |||
-------------------ATGGTATTGCAGAAAAGGTTAGAGTACGGATTTAATGGCTATCAGGCTCCGGCCATGCCGCGAGCTTCCCGATCAACTAGGgtaaatatcaatatgttctgcttctcatgtgtggctggttattaattactatcaatttgcttagagatttcatgaaaacaatttgtataattattttgttaaaatgtttcctag

upper sequence: Vv06s0004g04940.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA12G06680.1 (Glycine max), 5'ss of exon 1
TTGGTATGATATCTGAGAAATGGTGTTGCAGAAGAGGTTAGATTACGGATTTAATGGCTATCAGGTCCCTGCCACTCCCCGAGCTACCAGATCGGCAAGGgtatatag----attctaccattcgtagttagcgttgtttctt--ttttatttctatctgaaacactg-----aca-tgtgtttaattatattttt---acttgttttag--
                   ||||| ||||||||||||||||| ||||| |||||||||||||||   || ||||  |   ||||| || ||||  | |||||| |||     ||  |    |||  |  | | | || || ||  | | | ||   |  || |          ||| | ||| ||||||| || ||   |  | |  |||  
-------------------ATGGTCTTGCAGAAGAGGTTAGAGTACGGGTTTAATGGCTATCAGACTCCAGCCATGCTgtgagcttcccgatcaactagggtaaatatcaatatgttctgcttctcatgtggggctgcttattactatcaatttgcttagagatttcatgaaaacaatttgtataattattttgttaaaatgtttcctagag

upper sequence: Vv06s0004g04940.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G41210.1 (Glycine max), 5'ss of exon 1
TTGGTATGATATCTGAGAAATGGTGTTGCAGAAGAGGTTAGATTACGGATTTAATGGCTATCAGGTCCCTGCCACTCCCCGAGCTACCAGATCGGCAAGGgtatatagatt---ctaccattcgtagttagcgttgtttcttttttatttctat-ctgaaacactgacatgtgtttaattatatttttact-tgttttag
                   ||||||||||||||||||||||| ||  | ||| ||||||||||||| ||  |||  | |||||||||| |||  || | |||| |||  ||    |  |||| |  | ||          || | |||||   | |||         ||    ||  ||||| |||| | | | |  |||
-------------------ATGGTGTTGCAGAAGAGGTTAGACTATAGCTTTTATGGCTATCAGGTGCCAACCAAGCGCCGAGCTACCCGATTAGCTAAGgtaaataagtttacttctcatttggggctaattaatagaattatctatttagttactgggttgaaaccaatccttgtattattttttaaatatttcctag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27586973|gb|CB009668.1|CB009668
EST:     TTAATGGCTATCAGGTCCCTGCCACTCCCCGAGCTACCAGATCGGCAAGG                         AGGAGGGGTTCATTTAGGAAAAAAGTTGAAGACAATCAAATGTTCGCATTT
genomic: TTAATGGCTATCAGGTCCCTGCCACTCCCCGAGCTACCAGATCGGCAAGGgtatatagat ... cttgttttagAGGAGGGGTTTATTTAGGAAAAAAGTTGAAGACAATCAAATGTTCGCATTT