Sequence
atgc intronic sequence ATGC exonic sequenceGTTGCTTGGTTATGAAGGTGTGGAAGTTATAAACCCAGAGGGAGGCAAAGAAGATGCGGAAGAAGAAGCTCAAAGAGGAAGATGGAAGGAGGAGgcatgttgctttgccattctttaatcccttttgtattagatttttattttttttaatggttgaattcatacttattttattgacacttagtgggcctatg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g04930.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os03g16690.1 (Oryza sativa), 5'ss of exon 2
GTTGCTTGGTTATGAAGGTGTGGAAGTTATAAACCCAGAGGGAGGCAAAGAAGATGCGGAAGAAGAAGCTCAAAGAGGAAGATGGAAGGAGGAGgcatgttgctttgccattctttaatcccttttgtattagatttttattttttttaatggttgaat----tcatacttattttattgacacttagtgggcctatg----
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GTTGGTCGGCTATGAAGGACTTGAAGTTATTAACCCAGATGGAGGCACAGAAGATGCGGAAGCTGAGGCTTTGAGAGGGCGATGGAAACAAGAGgtgagaatcactga--------aatgtcaacaaaatagtaattttatttcttgaaatacaagcatgttattagactgaccattgtactagtttatgtgtatgtcaatt
upper sequence: Vv06s0004g04930.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G174644_T01 (Zea mays), 5'ss of exon 2
GTTGCTTGGTTATGAAGGTGTGGAAGTTATAAACCCAGAGGGAGGCAAAGAAGATGCGGAAGAAGAAGCTCAAAGAGGAAGATGGAAGGAGGAGgcatgttgctttg--ccattctttaatcccttttgtattagatttttattttttttaatggttgaattcatacttatttta--ttgacacttagtgggcctatg
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GCTGCTTGGTTATGAAGGCCTTGAAGTTATTAACCCCGATGGAGGCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagatttgaatcatcatcaaatagtgtat-tgctagaaagtcatgagaacaaat--tttatttgacaatacttccaaattgagggt-gttctgcatgga
upper sequence: Vv06s0004g04930.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G114126_T02 (Zea mays), 5'ss of exon 2
GTTGCTTGGTTATGAAGGTGTGGAAGTTATAAACCCAGAGGGAGGCAAAGAAGATGCGGAAGAAGAAGCTCAAAGAGGAAGATGGAAGGAGGAGgcatgttgctttgccattctttaatcccttttgtattagatttttattttttttaatggttgaattcatacttattttattgacacttagtgggcctatg-------
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GCTGCTTGGTTATGAAGGCCTTGAAGTTATTAACCCCGATGGAGGCACAGATGATGCTGAAGAAGAAGCTTTAAGGGGCCGATGGAAGCAAGAGgtaaggaaatgtg--aatcatca-----tcaaatagtgtaatgctagaaagccaagagaatacatttttatttgaacagtacctgcaaattgggaggatgttctaca
upper sequence: Vv06s0004g04930.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G14770.1 (Glycine max), 5'ss of exon 2
GTTGCTTGGTTATGAAGGTGTGGAAGTTATAAACCCAGAGGGAGGCAAAGAAGATGCGGAAGAAGAAGCTCAAAGAGGAAGATGGAAGGAGGAGgc----atgttgctttgc-cattcttt----aatcccttttgtattagatttttattttttttaatggttgaattcatacttattttattgacacttagtgggcctatg
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-------GCTTA-----GTGTAGAAGTCATAAATCCAGAGGGAGGTAAAGAAGATTCGGAGGAGGAAGCTCAGAGAGGAAGATGGAAACAGGAGgtgtttatttaattttgttcattttttgtgaagtttttttaatttcaggctttt---tctattattactttatctccaactccttgtttgcacaattaaaatg------
upper sequence: Vv06s0004g04930.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA12G06690.1 (Glycine max), 5'ss of exon 2
GTTGCTTGGTTATGAAGGTGTGGAAGTTATAAACCCAGAGGGAGGCAAAGAAGATGCGGAAGAAGAAGCTCAAAGAGGAAGATGGAAGGAGGAGgcat-gttgctttgccattctttaatcccttt---tgtattagatttt---tattttttt-taatggttgaattcatacttattttattgacacttagtgggcctatg
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-------GCTTA-----GTGTAGAAGTCATAAATCCAGAGGGAGGTAAAGAAGATGCAGAGGAGGAAGCTCAGAGAGGAAGATGGAAACAGGAGgtgttgtttatttaattttgtttaatttttgtaaatttttttaatttcaggcattttctagtattgctttatttctaactccctgtttgcacatttaaaa--------
upper sequence: Vv06s0004g04930.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G04210.1 (Glycine max), 5'ss of exon 2
GTTGCTTGGTTATGAAGGTGTGGAAGTTATAAACCCAGAGGGAGGCAAAGAAGATGCGGAAGAAGAAGCTCAAAGAGGAAGATGGAAGGAGGAGgcatgttgctttgccattc-tttaatcccttttgtattag-atttttattttttttaatggttgaattcatacttattttattgacacttagtgggcctatg
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ATTGCTGGGATATGAAGGGGTAGAAGTCATAAATCCGGACGGTGGTAAAGAGGATGCAGAGGAGGAAGCTCAAAGAGGAAGATGGAAACCAGAGgtgcatattttgcctgtttattttgttaatgttatttttgcagttccaacttttttcagtatcaccttattttttacttcctggttagacattgaaaatg--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30133371|gb|CB918710.1|CB918710EST: AGAAGAAGCTCAAAGAGGAAGATGGAAGGAGGAG GAAAGGGACAGTTACTGGAAGATGATGCAAAAGTATATAGGTTCAGATGTC
genomic: AGAAGAAGCTCAAAGAGGAAGATGGAAGGAGGAGgcatgttgct ... tttcttgtagGAAAGGGACAGTTACTGGAAGATGATGCAAAAGTATATAGGTTCAGATGTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGCTTGGTTATGAAGGTGTGGAAGTTATAAACCCAGAGGGAGGCAAAGAAGATGCGGAAGAAGAAGCTCAAAGAGGAAGATGGAAGGAGGAGgcatgttgctttgccattctttaatcccttttgtattagatttttattttttttaatggttgaattcatacttattttattgacacttagtgggcctatg
- - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG