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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGGGCGACGTTTTGCACTGGATTCGACAAGCAGTGGCTCTCGTGTGTGGGTTACTATGGGGTTCCATACCATTGGTTGGGGGCATATGGATCATCTTgtaagttgatgtttttatgccttaagctgtagtattattgtaaatttctttttacagttcttactttctatatttctgtgatgatatgcatgcagacttg...

Basic information

species Vitis vinifera
transcript Vv06s0004g04920.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g04920.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA12G06700.1 (Glycine max), 5'ss of exon 2
AATTGGGCGACGTTTTGCACTGGATTCGACAAGCAGTGGCTCTCGTGTGTGGGTTACTATGGGGTTCCATACCATTGGTTGGGGGCATATGGATCATCTTgtaagttgatgtttttatgccttaagctgtagtattattgtaaatttctttttacagttcttactttctatatttctgt-gatgatatgcatgcagacttg-
||||||| ||||| ||||| |||||| ||||||   | |  || | |||||| || || |||||||||||||| |||||||| ||||||||| | ||| ||||||| | | ||||| | | ||  |   ||||||  || |  |    | | |       | | ||||||| | | | | ||     | |||     |||| 
AATTGGGAGACGTATTGCATTGGATTAGACAAGTGCTTGGCCTTGCGTGTGGATTCCTTTGGGGTTCCATACCTTTGGTTGGAGGCATATGGTTTATCATgtaagt-gtttttttttttctttctggattagtatgtttatctaaagttgtatgtgtcattaaatttctatctgtatattgactgcgttcat-tgatcttgt

upper sequence: Vv06s0004g04920.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G14780.1 (Glycine max), 5'ss of exon 2
AATTGGGCGACGTTTTGCACTGGATTCGACAAGCAGTGGCTCTCGTGTGTGGGTTACTATGGGGTTCCATACCATTGGTTGGGGGCATATGGATCATCTTgtaagttgatgtttttatgccttaagctgtagtattattgtaaatttctttttacagttcttactttctatatttctgtgatgatatgcatgcagacttg---
||||||| ||||| ||||| |||||| ||||||   | |  || | |||||| || || |||||||||||||| |||||||| ||||||||| | ||| |||||||   | |||||   ||       |||   ||||  || | || | |||  |  |      |  |  |||  | |  ||||||   ||||   |||   
AATTGGGAGACGTATTGCATTGGATTAGACAAGTGCTCGGCCTTGCGTGTGGATTCCTTTGGGGTTCCATACCTTTGGTTGGAGGCATATGGTTTATCCTgtaagtgttttttttttctcccgggttagtatgtttatcttatagttgtatttgtatattgactgtaattcattgatcttgtgatat---tgcaattttgcaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110365966|gb|EC929552.1|EC929552
EST:     GGGTTACTATGGGGTTCCATACCATTGGTTGGGGGCATATGGATCATCTT                         ATTCTTGCTGATATCCTCTGGAATAATATATGGTTATTATGCAATAATACT
genomic: GGGTTACTATGGGGTTCCATACCATTGGTTGGGGGCATATGGATCATCTTgtaagttgat ... ctgtttgcagATTCTTGCTGATATCCTCTGGAATAATATATGGTTATTATGCAATAATACT