1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AATGGAACAGTTGAGGAGGTGAAGAAGATTGTTACTGTTTTGAATGAGGCTGAAGTTCCGTCCGAAGACATTGTGGgtgagttgagttgtgcagtttctatgtcatatttcattgaccactgaatgggatgcatcagagtatggtttacaaaatttcccaaactagcaagcatcat...
species | Vitis vinifera |
transcript | Vv06s0004g04800.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GATTGTTACTGTTTTGAATGAGGCTGAAGTTCCATCCGAAGACATTGTGG AGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTATEST: gi|351028511|gb|FQ444792.1|FQ444792
genomic: GATTGTTACTGTTTTGAATGAGGCTGAAGTTCCGTCCGAAGACATTGTGGgtgagttgag ... tttgttgcagAGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTAT
EST: GATTGTTACTGTTTTGAATGAGGCTGAAGTTCCGTCCGAAGACATTGTGG AGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTATEST: gi|30129525|gb|CB914864.1|CB914864
genomic: GATTGTTACTGTTTTGAATGAGGCTGAAGTTCCGTCCGAAGACATTGTGGgtgagttgag ... tttgttgcagAGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTAT
EST: GATTGTTACTGTTTTGAATGAGGCTGAAGTTCCGTCCGAAGACATTGTGG AGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTATEST: gi|294965195|gb|GW837026.1|GW837026
genomic: GATTGTTACTGTTTTGAATGAGGCTGAAGTTCCGTCCGAAGACATTGTGGgtgagttgag ... tttgttgcagAGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTAT
EST: GATTGTTACTGTTTTGAATGAGGCTGAAGTTCCATCCGAAGACATTGTGG AGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTATEST: gi|110378426|gb|EC943557.1|EC943557
genomic: GATTGTTACTGTTTTGAATGAGGCTGAAGTTCCGTCCGAAGACATTGTGGgtgagttgag ... tttgttgcagAGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTAT
EST: TTGAATGAGGCTGAAGTTCCGTCCGAAGACATTGTGG AGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTATEST: gi|110692722|gb|EE068329.1|EE068329
genomic: TTGAATGAGGCTGAAGTTCCGTCCGAAGACATTGTGGgtgagttgag ... tttgttgcagAGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTAT
EST: GATTGTTACTGTTTTGAATGAGGCTGAAGTTCCGTCCGAAGACATTGTGG AGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTATEST: gi|110395870|gb|EC961544.1|EC961544
genomic: GATTGTTACTGTTTTGAATGAGGCTGAAGTTCCGTCCGAAGACATTGTGGgtgagttgag ... tttgttgcagAGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTAT
EST: GCTGAAGTTCCGTCCGAAGACATTGTGG AGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTATEST: gi|349826936|gb|FQ419027.1|FQ419027
genomic: GCTGAAGTTCCGTCCGAAGACATTGTGGgtgagttgag ... tttgttgcagAGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTAT
EST: GATTGTTACTGTTTTGAATGAGGCTGAAGTTCCGTCCGAAGACATTGTGG AGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTATEST: gi|161710111|gb|FC059796.1|FC059796
genomic: GATTGTTACTGTTTTGAATGAGGCTGAAGTTCCGTCCGAAGACATTGTGGgtgagttgag ... tttgttgcagAGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTAT
EST: GATTGTTACTGTTTTGAATGAGGCTGAAGTTCCGTCCGAAGACATTGTGG AGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTATEST: gi|110726667|gb|EE102647.1|EE102647
genomic: GATTGTTACTGTTTTGAATGAGGCTGAAGTTCCGTCCGAAGACATTGTGGgtgagttgag ... tttgttgcagAGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTAT
EST: GCTGAAGTTCCATCCGAAGACATTGTGG AGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTATEST: gi|71871008|gb|DT020063.1|DT020063
genomic: GCTGAAGTTCCGTCCGAAGACATTGTGGgtgagttgag ... tttgttgcagAGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTAT
EST: GATTGTTACTGTTTTGAATGAGGCTGAAGTTCCGTCCGAAGACATTGTGG AGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTATEST: gi|294963951|gb|GW836826.1|GW836826
genomic: GATTGTTACTGTTTTGAATGAGGCTGAAGTTCCGTCCGAAGACATTGTGGgtgagttgag ... tttgttgcagAGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTAT
EST: GATTGTTACTGTTTCGAATGAGGCTGAAGTTCCGTCCGAAGACATTGTGG AGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAGGTTTATEST: gi|161720486|gb|FC070598.1|FC070598
genomic: GATTGTTACTGTTTTGAATGAGGCTGAAGTTCCGTCCGAAGACATTGTGGgtgagttgag ... tttgttgcagAGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTAT
EST: GATTGTTACTGTTTTGAATGAGGCTGAAGTTCCGTCCGAAGACATTGTGG AGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTATEST: gi|161714171|gb|FC062916.1|FC062916
genomic: GATTGTTACTGTTTTGAATGAGGCTGAAGTTCCGTCCGAAGACATTGTGGgtgagttgag ... tttgttgcagAGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTAT
EST: GATTGTTACTGTTTTGAATGAGGCTGAAGTTCCGTCCGAAGACATTGTGG AGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTAT
genomic: GATTGTTACTGTTTTGAATGAGGCTGAAGTTCCGTCCGAAGACATTGTGGgtgagttgag ... tttgttgcagAGGTTGTGGTAAGTCCTCCATTTGTGTTTCTTCCTTTGGTAAAAAGTTTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGGAACAGTTGAGGAGGTGAAGAAGATTGTTACTGTTTTGAATGAGGCTGAAGTTCCGTCCGAAGACATTGTGGgtgagttgagttgtgcagtttctatgtcatatttcattgaccactgaatgggatgcatcagagtatggtttacaaaatttcccaaactagcaagcatcat
- - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacaaaa