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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAGgttatttctactcttgatttgatttgcttatcataaacataagattgaaattgctagtccatgatgtcaattttattgattttccctttattttaacttt...

Basic information

species Vitis vinifera
transcript Vv06s0004g04700.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110362261|gb|EC925781.1|EC925781
EST:     GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAG                         GGAGTATTTCACGTCACACTGTTGAACACTCG
genomic: GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAGgttatttcta ... actttttcagGGAGTATTTCACGTCACACTGTTGAACACTCG
EST: gi|34320123|gb|CF372877.1|CF372877
EST:     GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAG                         GGAGTATTTCACGTCACACTGTTGAACACTCG
genomic: GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAGgttatttcta ... actttttcagGGAGTATTTCACGTCACACTGTTGAACACTCG
EST: gi|87586971|gb|DY475025.1|DY475025
EST:     GGAAGCTTACTACGTCGTCAAAAGAG                         GGAGTATTTCACGTCACACTGTTGAACACTCG
genomic: GGAAGCTTACTACGTCGTCAAAAGAGgttatttcta ... actttttcagGGAGTATTTCACGTCACACTGTTGAACACTCG
EST: gi|110424097|gb|EC990451.1|EC990451
EST:     GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAG                         GGAGTATTTCACGTCACACTGTTGAACACTCG
genomic: GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAGgttatttcta ... actttttcagGGAGTATTTCACGTCACACTGTTGAACACTCG
EST: gi|110713192|gb|EE088900.1|EE088900
EST:     GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAG                         GGAGTATTTCACGTCACACTGTTGAACACTCG
genomic: GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAGgttatttcta ... actttttcagGGAGTATTTCACGTCACACTGTTGAACACTCG
EST: gi|34545250|gb|CF513482.1|CF513482
EST:     GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAG                         GGAGTATTTCACGTCACACTGTTGAACACTCG
genomic: GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAGgttatttcta ... actttttcagGGAGTATTTCACGTCACACTGTTGAACACTCG
EST: gi|110686881|gb|EE063803.1|EE063803
EST:     GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAG                         GGAGTATTTCACGTCACACTGTTGAACACTCG
genomic: GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAGgttatttcta ... actttttcagGGAGTATTTCACGTCACACTGTTGAACACTCG
EST: gi|32458600|gb|CD799774.1|CD799774
EST:     GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAG                         GGAGTATTTCACGTCACACTGTTGAACACTCG
genomic: GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAGgttatttcta ... actttttcagGGAGTATTTCACGTCACACTGTTGAACACTCG
EST: gi|110365199|gb|EC927802.1|EC927802
EST:     GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAG                         GGAGTATTTCACGTCACACTGTTGAACACTCG
genomic: GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAGgttatttcta ... actttttcagGGAGTATTTCACGTCACACTGTTGAACACTCG
EST: gi|110380640|gb|EC945923.1|EC945923
EST:     GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAG                         GGAGTATTTCACGTCACACTGTTGAACACTCG
genomic: GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAGgttatttcta ... actttttcagGGAGTATTTCACGTCACACTGTTGAACACTCG
EST: gi|110717262|gb|EE092966.1|EE092966
EST:     GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAG                         GGAGTATTTCACGTCACACTGTTGAACACTCG
genomic: GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAGgttatttcta ... actttttcagGGAGTATTTCACGTCACACTGTTGAACACTCG
EST: gi|34320345|gb|CF373099.1|CF373099
EST:     GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAG                         GGAGTATTTCACGTCACACTGTTGAACACTCG
genomic: GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAGgttatttcta ... actttttcagGGAGTATTTCACGTCACACTGTTGAACACTCG
EST: gi|110384561|gb|EC949005.1|EC949005
EST:     GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAG                         GGAGTATTTCACGTCACACTGTTGAACACTCG
genomic: GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAGgttatttcta ... actttttcagGGAGTATTTCACGTCACACTGTTGAACACTCG
EST: gi|110702521|gb|EE081333.1|EE081333
EST:     GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAG                         GGAGTATTTCACGTCACACTGTTGAACACTCG
genomic: GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAGgttatttcta ... actttttcagGGAGTATTTCACGTCACACTGTTGAACACTCG
EST: gi|110711893|gb|EE088894.1|EE088894
EST:     GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAG                         GGAGTATTTCACGTCACACTGTTGAACACTCG
genomic: GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAGgttatttcta ... actttttcagGGAGTATTTCACGTCACACTGTTGAACACTCG
EST: gi|110381069|gb|EC946383.1|EC946383
EST:     GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAG                         GGAGTATTTCACGTCACACTGTTGAACACTCG
genomic: GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAGgttatttcta ... actttttcagGGAGTATTTCACGTCACACTGTTGAACACTCG
EST: gi|34545330|gb|CF513562.1|CF513562
EST:     GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAG                         GGAGTATTTCACGTCACACTGTTGAACACTCG
genomic: GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAGgttatttcta ... actttttcagGGAGTATTTCACGTCACACTGTTGAACACTCG
EST: gi|110385580|gb|EC950119.1|EC950119
EST:     GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAG                         GGAGTATTTCACGTCACACTGTTGAACACTCG
genomic: GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAGgttatttcta ... actttttcagGGAGTATTTCACGTCACACTGTTGAACACTCG
EST: gi|110378520|gb|EC943657.1|EC943657
EST:     GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAG                         GGAGTATTTCACGTCACACTGTTGAACACTCG
genomic: GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAGgttatttcta ... actttttcagGGAGTATTTCACGTCACACTGTTGAACACTCG
EST: gi|34545089|gb|CF513321.1|CF513321
EST:     GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAG                         GGAGTATTTCACGTCACACTGTTGAACACTCG
genomic: GGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAGgttatttcta ... actttttcagGGAGTATTTCACGTCACACTGTTGAACACTCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGCAGCTGCCAGAGCCGCAGCCGAGGAAGCTTACTACGTCGTCAAAAGAGgttatttctactcttgatttgatttgcttatcataaacataagattgaaattgctagtccatgatgtcaattttattgattttccctttattttaacttt

-  GCAGCT
- - CAGCTG
- -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attgaaa