Sequence
atgc intronic sequence ATGC exonic sequenceAAACTGATTTAAAATGGCAGAAGAAGATATTCAGCCACTTGTCTGCGATAATGGTACCGGAATGGTTAAGgtatcatatcaggattatcatttgtttagaaataataacctgctaagtcatttatcaatcttcacagctaattctgaaggcttgcatgatattcactgacatcactgttgaattgttttttggtctgatgcaatgccaacctttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g04570.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G04360.1 (Glycine max), 5'ss of exon 1
---------------------------AAACTGATTTAAAATGGCAGA---AGAAGATATTCAGCCACTTGTCTGCGATAATGGTACCGGAATGGTTAAGgtatca---------tatcaggattatcat-ttgtttagaaataataacctgctaagtcatttat-caatcttcacagctaattctgaaggcttgcatgatattcac-tgac--atcactgttgaattgtttt---ttggtctga--tgcaatgc-caacctttag-------
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AGATGAAATAGATGCTTTGTGCAGTTTTTTTTGAAAGATAATGGCAGACACCGAGGACATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTTAAGgtaaaaaaaataaaatacgaggatgattttattatttccaaattttgcttgtagaagtgatttggatagtatgttcttttttgcttggcgtactttgacacatgcatgtgaagggtaccttttgatttgacctaatttactctggattgaaatttgcaatttgcaatgtgtag
upper sequence: Vv06s0004g04570.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G41060.1 (Glycine max), 5'ss of exon 1
AAACTGATTTAAAATGGCAGAA---GAAGATATTCAGCCACTTGTCTGCGATAATGGTACCGGAATGGTTAAGgt-----atcatatcaggattatcat-ttgtttagaaataataacctgctaagtcatttatcaatcttcacagctaattctgaaggcttgcatgatattcactgacatcactgttgaattgttttttggtctgatgcaatgccaacctttag
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-------------ATGGCAGACACTGAGGATATTCAACCACTCGTATGCGATAATGGGACAGGAATGGTTAAGgttaaaaaaattacgaggatgattttattatttccaaattttgcatgtagaagtgatttt---gttttgcttgccgtactttgacacatgcatgagaag-actaat-ttactgt--gagtgttttgcaatttgct---atgtctag------
upper sequence: Vv06s0004g04570.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA12G06820.1 (Glycine max), 5'ss of exon 2
AAACTGATTTAAAATGGCAGAAG---AAGATATTCAGCCACTTGTCTGCGATAATGGTACCGGAATGGTTAAGgtatcatatcaggattatcatttgtttagaaataataacctgctaagtcatttatcaatcttcacagctaattctgaaggcttgcatgatattcactg-acatcactgttgaattgttttttggtctgatgcaatgccaacctttag
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TTGAAAATAAAAAATGGCAGATGGTGAGGATATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTGAAAgtaagatatctggatggttttattttcaatatttttgtttcctgcagtgattgaccagtactttt--caatttctattgatttac-tga-gtctactgtattgcaatgtttag----------------------------------
upper sequence: Vv06s0004g04570.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA12G06820.2 (Glycine max), 5'ss of exon 2
AAACTGA---TTTAAAATGGCAGAA---GAAGATATTCAGCCACTTGTCTGCGATAATGGTACCGGAATGGTTAAGgtatcatatcaggattatcatttgtttagaaataataacctgctaagtcatttatcaatcttcacagctaattctgaaggcttgcatgatattcactg-acatcactgttgaattgttttttggtctgatgcaatgccaacctttag
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CAGTTGAAAATAAAAAATGGCAGATGGTGAGGATATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTGAAAgtaagatatctggatggttttattttcaatatttttgtttcctgcagtgattgaccagtactttt--caatttctattgatttac-tga-gtctactgtattgcaatgtttag----------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110387986|gb|EC952697.1|EC952697EST: AAGAAGATATTCAGCCACTTGTCTGCGATAATGGTACCGGAATGGTTAAG GCCGGATTTGCAGGAGATGATGCTCCAAGGGCTGTGTTTCCTAGTATTGTG
genomic: AAGAAGATATTCAGCCACTTGTCTGCGATAATGGTACCGGAATGGTTAAGgtatcatatc ... caacctttagGCCGGATTTGCAGGAGATGATGCTCCAAGGGCTGTGTTTCCTAGTATTGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAACTGATTTAAAATGGCAGAAGAAGATATTCAGCCACTTGTCTGCGATAATGGTACCGGAATGGTTAAGgtatcatatcaggattatcatttgtttagaaataataacctgctaagtcatttatcaatcttcacagctaattctgaaggcttgcatgatattcactgacatcactgttgaattgttttttggtctgatgcaatgccaacctttag
- - - - - - - - - - AAGAAG