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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCCTAACAGCAGTGCATGTTCCCTATGCATATGGATTTGCGATTATATTGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaattattgtctttatcattaaggaagaaaacttatagaatgatgatctttctaccattctgtatagcaaaggcataaattcctaaaatagagac...

Basic information

species Vitis vinifera
transcript Vv06s0004g04460.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g04460.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G14960.1 (Glycine max), 5'ss of exon 2
TGGCCTAACAGCAGTGCATGTTCCCTATGCATATGGATTTGCGATTATATTGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaattattgtctttatcattaagg---aagaaaac-ttatagaatgatgatctttctaccattctgtatagcaaaggcataaattcctaaaatagagac
||||||  | || |||||||| || ||||||||||||||||| || ||||||||||||||||| || ||    |||||   ||||||||||||| | |||||    |   ||| |    ||   ||  |   |||||| | | | | | |    |  || ||   |  | ||  |   | |  ||  |||       ||     
TGGCCTTTCTGCCGTGCATGTCCCTTATGCATATGGATTTGCTATCATATTGCTCACTGTTATAGTTAAGGCCGCTACGCTTCCCTTGACAAAGCAACAGgttggtacaaattatagcaatttctagagccaaagaaagcgtgacaaatttgcaaatttactgaaa--ccgttaaattatgtaattcattttgtttgtaaca--

upper sequence: Vv06s0004g04460.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA12G06920.1 (Glycine max), 5'ss of exon 2
TGGCCTAACAGCAGTGCATGTTCCCTATGCATATGGATTTGCGATTATATTGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaattattgtctttatcattaaggaagaaaacttatagaatgatgatctttctaccattctgta---tagcaaaggcataaattcctaaaatagagac-
||| ||  | || |||||||| || ||||||||||||||||| || ||||||||||||||||| || ||    || ||   |||| |||||||| | |||||    |   ||| | |  ||   ||  |   || |     || ||||  |  || | |   | ||| |   |   ||     ||| |  ||    | || || 
TGGTCTTTCTGCCGTGCATGTCCCTTATGCATATGGATTTGCTATCATATTGCTCACTGTTATAGTTAAGGCAGCGACGCTTCCCCTGACAAAGCAACAGgttggtacaaattatgtcaatttctagagccaaagaa----agcatgacaaatttgcaaatttactgaaacctttaaattatgtaattcactttgtttgaaaca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349814872|gb|FQ410095.1|FQ410095
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|351048056|gb|FQ441228.1|FQ441228
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGGCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|351038970|gb|FQ457645.1|FQ457645
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|349821185|gb|FQ408772.1|FQ408772
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|351053570|gb|FQ462645.1|FQ462645
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|351035254|gb|FQ458611.1|FQ458611
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|349808994|gb|FQ407443.1|FQ407443
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|351037204|gb|FQ457037.1|FQ457037
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|349809519|gb|FQ414409.1|FQ414409
EST:     CCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: CCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|349822872|gb|FQ398259.1|FQ398259
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|349824427|gb|FQ417814.1|FQ417814
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|349817462|gb|FQ407252.1|FQ407252
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|349825681|gb|FQ421780.1|FQ421780
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|349815532|gb|FQ400688.1|FQ400688
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|349832322|gb|FQ420883.1|FQ420883
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|351042878|gb|FQ451172.1|FQ451172
EST:     TGCTCACTGTTATCGTGAGAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|349829872|gb|FQ422185.1|FQ422185
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|349809169|gb|FQ398942.1|FQ398942
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|349815709|gb|FQ400865.1|FQ400865
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|351053158|gb|FQ455615.1|FQ455615
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|349816846|gb|FQ399714.1|FQ399714
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|352790292|gb|FQ481491.1|FQ481491
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|351022475|gb|FQ446997.1|FQ446997
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|110373005|gb|EC937208.1|EC937208
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|349808495|gb|FQ405639.1|FQ405639
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|351052838|gb|FQ456566.1|FQ456566
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|351024245|gb|FQ423668.1|FQ423668
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|351033979|gb|FQ463034.1|FQ463034
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|349823559|gb|FQ414969.1|FQ414969
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACAGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|110711190|gb|EE087433.1|EE087433
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|349819385|gb|FQ412279.1|FQ412279
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|351025288|gb|FQ434301.1|FQ434301
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|349813816|gb|FQ414050.1|FQ414050
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|352778080|gb|FQ467133.1|FQ467133
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCCACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|110394254|gb|EC958925.1|EC958925
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|351037566|gb|FQ462549.1|FQ462549
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|351025464|gb|FQ435156.1|FQ435156
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTTGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|352799049|gb|FQ480898.1|FQ480898
EST:     CCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATACAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: CCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|352791382|gb|FQ480961.1|FQ480961
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|351019788|gb|FQ439605.1|FQ439605
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|351027277|gb|FQ444526.1|FQ444526
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|352786390|gb|FQ478999.1|FQ478999
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCGAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|351038919|gb|FQ457594.1|FQ457594
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|110374436|gb|EC939192.1|EC939192
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|352763817|gb|FQ473520.1|FQ473520
EST:     TGCTCACTGTTATCGTGAAAATTGCTACCTATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|351053162|gb|FQ455619.1|FQ455619
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|27585311|gb|CB008006.1|CB008006
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|33402160|gb|CF207787.1|CF207787
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
EST: gi|349815482|gb|FQ400638.1|FQ400638
EST:     TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAG                         GTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT
genomic: TGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaatt ... ttgtatgtagGTTGAATCAACACTGGCCATGCAAAATCTTCAACCAAAGATCAAGGCCATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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TGGCCTAACAGCAGTGCATGTTCCCTATGCATATGGATTTGCGATTATATTGCTCACTGTTATCGTGAAAATTGCTACATATCCCTTGACAAAGAAGCAGgtgaacaattattgtctttatcattaaggaagaaaacttatagaatgatgatctttctaccattctgtatagcaaaggcataaattcctaaaatagagac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatag