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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTAAAAACCCCGTTGATGGCTTCTCCGCCGGTTTGGTCGACGAGAGCAATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTAgtacgtgttccaatctctttttttgctttgaatgttgtgtactttgttatgttttaggttttactctgggaaggattggatcaaggttgagattgtgcct...

Basic information

species Vitis vinifera
transcript Vv06s0004g04430.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g04430.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G04470.2 (Glycine max), 5'ss of exon 2
TTTGTAAAAACCCCGTTGATGGCTTCTCCGCCGGTTTGGTCGACGAGAGCAATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTAgta---cgtgttc-----caatctctttttttgctttgaatgttgtgtactttgttatgttttaggttttactctgggaaggattggatcaaggttgagattgtgcct
|||| ||||||||||| |||||||| || ||||||||||||||||| | ||| || |||||||||||||| || || |||||||||||||||||||| |||||    ||||||      || |||||||||  |  | | |  || | | ||||   || ||    ||    | |  ||     ||       |  | |||  |    
TTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAACCAACATTTTTGAATGGAGTGTAACTATAATTGGACCTCCCGATACTCTTTAgtaagctgtgttcactaaaaacctcttttttcacactaatttatgcg-attttgaattgatt---attgggattttagattccctgtgcttgtgcagtgatgat----

upper sequence: Vv06s0004g04430.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G40990.1 (Glycine max), 5'ss of exon 2
TTTGTAAAAACCCCGTTGATGGCTTCTCCGCCGGTTTGGTCGACGAGAGCAATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTAgtacgtgttccaatctctttttttgctttgaatgttgtgtactttgttatgttttaggttttactctgggaaggattggatcaaggttgagattgtgcct------
|||| || |||||||| |||||||| |||||||||||||||||||| | ||| || |||||||||||||| || || |||||||||||||||||||| ||||| ||  ||    ||   | | |  ||    | |        ||  |  | ||| | ||| | | | || |   ||||||     |||   ||||||        
TTTGCAAGAACCCCGTCGATGGCTTTTCCGCCGGTTTGGTCGACGAAACCAACATTTTTGAATGGAGTGTGACTATAATTGGACCTCCCGATACTCTTTAgtaagttctcttcactaaatatctctttc---tttcacactaatttatgcgattttgatttgattattgggatt-ttggattccccttgt--ttgtgcagtgatga

upper sequence: Vv06s0004g04430.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G14980.2 (Glycine max), 5'ss of exon 2
TTTGTAAAAACCCCGTTGATGGCTTCTCCGCCGGTTTGGTCGACGAGAGCAATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTAgtacgtgttccaatctctttttttgctttgaatgttgtgtactttgttatgtttta--ggttttactctgggaaggattggatcaaggttgagatt---gtgcct-
|||| ||||||||||| || |||||||| |||||||||||||| || | ||| || |||||||||||||||||||| ||||| || ||||||||||| ||||| |    |     | ||  ||    |   ||| | |    ||||  |   | |   |  |||  |||| ||    | |  |||| |||  ||||   | |  | 
TTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAACCAACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTAgtaagccccc-----ttttgattaatatatcatgcttttgcttttgccaccctctgacgaattttttctgtgattc-tcgattcaaagtttggatttttgggtttt

upper sequence: Vv06s0004g04430.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA12G06960.1 (Glycine max), 5'ss of exon 2
TTTGTAAAAACCCCGTTGATGGCTTCTCCGCCGGTTTGGTCGACGAGAGCAATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTAgtacgtgttccaatctctttttttgctttgaatgttgtgtactttgttatgttttaggttttactctgggaaggattggatcaaggttgagatt---gtgcct-
|||| ||||||||||| || |||||||| |||||||||||||| || | ||| || || ||||||||||||||||| |||||||| ||||||||||| ||||| |    ||  |   ||  | |    ||  | |||  |       | ||    |  ||||  |||| ||    | |  |||| |||  ||||   | |  | 
TTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAACCAACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTAgtaagc--cccttttgattaatatatcatgctt-ttgcttttgccactctgacggaattttttttctgtgattc-tcgattcaaagtttggatttttgggtttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110710545|gb|EE086990.1|EE086990
EST:     AATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTA                         TGATGGGGGATTTTTCAATGCCATCATGAGCTTTCCACCCAATTATCCAAA
genomic: AATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTAgtacgtgttc ... atgactgcagTGATGGGGGATTTTTCAATGCCATCATGAGCTTTCCACCCAATTATCCGAA
EST: gi|110364996|gb|EC928664.1|EC928664
EST:     AATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTA                         TGATGGGGGATTTTTCAATGCCATCATGAGCTTTCCACCCAATTATCCGAA
genomic: AATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTAgtacgtgttc ... atgactgcagTGATGGGGGATTTTTCAATGCCATCATGAGCTTTCCACCCAATTATCCGAA
EST: gi|110427457|gb|EC993894.1|EC993894
EST:     AATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTA                         TGATGGGGGATTTTTCAATGCCATCATGAGCTTTCCACCCAATTATCCAAA
genomic: AATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTAgtacgtgttc ... atgactgcagTGATGGGGGATTTTTCAATGCCATCATGAGCTTTCCACCCAATTATCCGAA
EST: gi|110696034|gb|EE074731.1|EE074731
EST:     AATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTA                         TGATGGGGGATTTTTCAATGCCATCATGAGCTTTCCACCCAATTATCCAAA
genomic: AATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTAgtacgtgttc ... atgactgcagTGATGGGGGATTTTTCAATGCCATCATGAGCTTTCCACCCAATTATCCGAA
EST: gi|110695874|gb|EE074387.1|EE074387
EST:     AATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTA                         TGATGGGGGATTTTTCAATGCCATCATGAGCTTTCCACCCAATTATCCAAA
genomic: AATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTAgtacgtgttc ... atgactgcagTGATGGGGGATTTTTCAATGCCATCATGAGCTTTCCACCCAATTATCCGAA
EST: gi|110706251|gb|EE081613.1|EE081613
EST:     AATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTA                         TGATGGGGGATTTTTCAATGCCATCATGAGCTTTCCACCCAATTATCCAAA
genomic: AATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTAgtacgtgttc ... atgactgcagTGATGGGGGATTTTTCAATGCCATCATGAGCTTTCCACCCAATTATCCGAA
EST: gi|110693589|gb|EE069952.1|EE069952
EST:     AATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTA                         TGATGGGGGATTTTTCAATGCCATCATGAGCTTTCCACCCAATTATCCAAA
genomic: AATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTAgtacgtgttc ... atgactgcagTGATGGGGGATTTTTCAATGCCATCATGAGCTTTCCACCCAATTATCCGAA
EST: gi|110376683|gb|EC941750.1|EC941750
EST:     AATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTA                         TGATGGGGGATTTTTCAATGCCATCATGAGCTTTCCACCCAATTATCCAAA
genomic: AATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTAgtacgtgttc ... atgactgcagTGATGGGGGATTTTTCAATGCCATCATGAGCTTTCCACCCAATTATCCGAA
EST: gi|110696006|gb|EE074671.1|EE074671
EST:     AATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTA                         TGATGGGGGATTTTTCAATGCCATCATGAGCTTTCCACCCAATTATCCAAA
genomic: AATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTAgtacgtgttc ... atgactgcagTGATGGGGGATTTTTCAATGCCATCATGAGCTTTCCACCCAATTATCCGAA
EST: gi|30124774|gb|CB910113.1|CB910113
EST:     AATATCTTTGAATGGAGCGTCACCATTATTGGACCTCCCGATACTCTGTA                         TGATGGGGGATTTTTCAATGCCATCATGAGCTTTCCACCCAATTATCCAAA
genomic: AATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCTGTAgtacgtgttc ... atgactgcagTGATGGGGGATTTTTCAATGCCATCATGAGCTTTCCACCCAATTATCCGAA