Sequence
atgc intronic sequence ATGC exonic sequenceGTGATAAGTCTGCGAGAGATCTGCGATCTGGGGACTCCAATTTGAGTAACAAGCACGATAAGGATAAGGGCGTCAATGTGCAGGTTCTTCTGAGATGCAGgtgagttgaattggtggcttaacaggtttgattttgcatctgagttgcatatactgatgttgttatgtatgtgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03810.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os05g02670.2 (Oryza sativa), 5'ss of exon 3
-GTGATAAGTCTGCGAGAGATCTGCGATCTGGGGACTCCAATTTGAGTAACAAGCACGATAAGGATAAGGGCGTCAATGTGCAGGTTCTTCTGAGATGCAGgtgagttgaatt----ggtggc--ttaacaggtttgattttgcatctgagttgcatatactgatgttgttatgtatgtgtag----------
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CCGGAGGTGACGCCAATGGCGGCGCAAAC-ACTAACAGTAACTCCATTCCCAGAGGTGATAAGGAGAAGGGAGTCAATGTGCAGGTCATTCTCAGATGCAGgtgaagagagctcagcagttgcagttcagaaattatgtttggttcttctttttttttaatggttctcacaatgtgaattttgctgcattcag
upper sequence: Vv06s0004g03810.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ12240 (Selaginella moellendorffii), 5'ss of exon 1
GTGATAAGTCTGCGAGAGATCTGCGATCTGGGGACTCCAATTTGAGTAACAAGCACGATAAGGATAAGGGCGTCAATGTGCAGGTTCTTCTGAGATGCAGgtgagttgaattggtggcttaacaggtttgattttgcatctgagttgcatatactgatgttgttatgtatgtgtag
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---------------------------------ATGGCGGGCCG--CCACGAGAAAGACAAGGACAAGGGCGTCAATGTCCAGGTTCTACTGCGATGCAGgtaaga-gaatgcttgatctggcctccgccgctgcccatctct-ctgttcttgctactccag--------------
upper sequence: Vv06s0004g03810.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ25853 (Selaginella moellendorffii), 5'ss of exon 1
GTGATAAGTCTGCGAGAGATCTGCGATCTGGGGACTCCAATTTGAGTAACAAGCACGATAAGGATAAGGGCGTCAATGTGCAGGTTCTTCTGAGATGCAGgtgagttgaattggtggcttaacaggtttgattttgcatctgagttgcatatactgatgttgttatgtatgtgtag
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---------------------------------ATGGCGGGCCG--CCACGAGAAAGACAAGGACAAGGGCGTCAATGTCCAGGTTCTACTGCGATGCAGgtaaga-gaatgcttgatctggcctccgccgctgcccatctct-ctgctcttgctactccag--------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30301488|gb|CB978282.1|CB978282EST: AAGCACGATAAGGATAAGGGCGTCAATGTGCAGGTTCTTCTGAGATGCAG GCCATTGAGTGAGGATGAGCTGAGAGTGAATACTCCGGTGGTGATTTCATG
genomic: AAGCACGATAAGGATAAGGGCGTCAATGTGCAGGTTCTTCTGAGATGCAGgtgagttgaa ... gtatgtgtagGCCATTGAGTGAGGATGAGCTGAGAGTGAATACTCCGGTGGTGATTTCATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGATAAGTCTGCGAGAGATCTGCGATCTGGGGACTCCAATTTGAGTAACAAGCACGATAAGGATAAGGGCGTCAATGTGCAGGTTCTTCTGAGATGCAGgtgagttgaattggtggcttaacaggtttgattttgcatctgagttgcatatactgatgttgttatgtatgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG