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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACAGATGCTCACGCGGAAGAAGCAATTGAAGCTATCAAGGCAGGGAAGGTCATTGCCGTGCCCACTGATACCCTCTATGGATTCGCTTGTGATGCTTGgtaaatttttccttaatttttttcttggttatttttgtgcattgtaggtgtttgatatttgagttgaaagtcagttttattgtcattttattttattttt...

Basic information

species Vitis vinifera
transcript Vv06s0004g02920.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g02920.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA12G07280.1 (Glycine max), 5'ss of exon 2
------------------------------------------------------CAACAGATGCTCACGCGGAAGAAGCAATTGAAGCTATCAAGGCAGGGAAGGTCATTGCCGTGCCCACTGATACCCTCTATGGATTCGCTTGTGATGCTTGgtaaatttttccttaatttttttcttggttatttttgtgcattgtaggtgtttgatatttgagttgaaagtcagttttattgtcattttattttattttt
                                                      | ||||||||| | || | ||| ||| |||||||| | || || ||| | |||||||| |||||||||||||| ||||||||||| |||||||||||||||||   |  |  || | | | | |||      | ||    |   |                                                       
CTAAAAACATGTCTTGCAGTGTCAGTGTGGATAATTCTGATATGGTTCATCCAGCCACAGATGCTTATGCTGGAGAGGCAGTTGAAGCTTTGAAAGCTGGgtaagtcattgcagtgcccactgatacactctatggatttgcttgtgatgcttggtatgctgctatttcaatctctgctttaaacctattaaatagcctt------------------------------------------------------

upper sequence: Vv06s0004g02920.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G20640.1 (Glycine max), 5'ss of exon 2
CAACAGATGCTCACGCGGAAGAAGCAATTGAAGCTATCAAGGCAGGGAAGGTCATTGCCGTGCCCACTGATACCCTCTATGGATTCGCTTGTGATGCTTGgtaaatttttccttaatttttttcttgg----ttatttttgtgcattgtaggtgtttgatatttgagttgaaagtcagttttattgtcattttattttattttt
||||||||||| | || | ||| ||| |||||||| | || || ||||| |||||||| || || |||||||| ||||||||||| |||||||||||||||||   |  |  || | | |   |||      | || |||    |       ||  ||  |||| |    |||  ||||   ||| | || ||     | |   
CAACAGATGCTTATGCTGGAGAGGCAGTTGAAGCTTTGAAAGCTGGGAAAGTCATTGCAGTACCAACTGATACACTCTATGGATTTGCTTGTGATGCTTGgtatgctgctatttcaatctccgctttaaacctaatatttcccgacaaataatgcgtgtaatttaaaaaaaaaaacagtaaaatt-ttatcttcaaagact---

upper sequence: Vv06s0004g02920.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G60590.2 (Arabidopsis thaliana), 5'ss of exon 2
CAACAGATGCTCACGCGGAAGAAGCAATTGAAGCTATCAAGGCAGGGAAGGTCATTGCCGTGCCCACTGATACCCTCTATGGATTCGCTTGTGATGCTTGgtaaatt---tttccttaatttttttcttggt-tatttttgtgcattgtaggtgt----ttgatatttgagttgaaagtcagttttattgtcattttattttattttt
|||| || ||  | ||  ||||||| ||||||||||||||  | |  || || ||||| ||||| || ||||| || ||||| |||||||||||||||||||||  |     || | | ||| |    || | ||   || | |||||   |       |||  ||||  ||   | | |||                          
CAACTGAAGCCTATGCACAAGAAGCTATTGAAGCTATCAAATCCGAAAAAGTTATTGCTGTGCCTACCGATACGCTTTATGGCTTCGCTTGTGATGCTTGgtaatctaaaaatcttcactttatcagctgatataaccttttacattgcctggactaagttgtgatttatgtaacatgacag--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71857800|gb|DT006855.1|DT006855
EST:     GTCATTGCCGTGCCCACTGATACCCTCTATGGATTCGCTTGTGATGCTTG                         TTCTTCAGAAGCAGTCAATAGGATATATGAGATCAAAGGCCGCAAACATAC
genomic: GTCATTGCCGTGCCCACTGATACCCTCTATGGATTCGCTTGTGATGCTTGgtaaattttt ... gtaattgcagTTCTTCAGAAGCAGTCAATAGGATATATGAGATCAAAGGCCGCAAACATAC