Sequence
atgc intronic sequence ATGC exonic sequenceGACGATGCTTCTATTTCATGGAGGAAAAGAAAGAAGCACTTTTTCATTCTGAGTCACTCTGGGAAACCAATATATTCCAGgtgtggttctgctgccaagaaaatgcatattatgaattttgcaggctctattaatcccaatgcagagatctgatacaaaaaaaaaggaaagaaagaaaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02820.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA12G29450.3 (Glycine max), 5'ss of exon 2
GACGATGCTTCTATTTCATGGAGGAAAAGAAAGAAGCACTTTTTCATTCTGAGTCACTCTGGGAAACCAATATATTCCAGgtgtggttctgctgccaagaaaatgcatattatgaattttgcaggctctattaatcccaatgcagagatctgatacaaaaaaaaaggaaagaaagaaaaa-------------
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GATGATGCTTCCATTTCATGGAGGAAAAGGAAGAAGCATTTTTTTGTTCTGAGTCATTCTGGCAAACCAATATATTCTAGgt-tagtgtt--tatcaactcctcacacaa-actcgtcttgattgctgttcatatctctttctgggattgctacctcaagcaacatgactcgtacctctatttcttgtttcag
upper sequence: Vv06s0004g02820.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G40080.1 (Glycine max), 5'ss of exon 3
GACGATGCTTCTATTTCATGGAGGAAAAGAAAGAAGCACTTTTTCATTCTGAGTCACTCTGGGAAACCAATATATTCCAGgtgtggttctgctgccaagaaaatgcatattatgaattttgcaggctctattaatcccaatgcagagatctgatacaaaaaaaaaggaaagaaagaaaaa-------------
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GATGATGCTTCCATTTCATGGAGGAAAAGGAAGAAGCATTTTTTTGTTCTGAGTAATTCTGGCAAACCAATATATTCTAGgt-tagtttt--tatcaactgctcacacaa-actccccttgattgctgttcatatctctttctcggattgctgcctaaaacaacatgactcattcctctatttcttgtttcag
upper sequence: Vv06s0004g02820.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G28390.1 (Arabidopsis thaliana), 5'ss of exon 2
GACGATGCTTCTATTTCATGGAGGAAAAGAAAGAAGCACTTTTTCATTCTGAGTCACTCTGGGAAACCAATATATTCCAGgtgtgg----ttct------------gctgccaagaaaatg--catattatgaattttgcaggct---ctattaatcccaatgcagagatctgatacaaaaaaaaaggaaagaaagaaaaa-
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GATGATGCTTCTACGTCATGGAGAAAGAGGAAGAAGCATTTCTTCATACTGAGTAACTCAGGCAAACCGATATATTCCAGgtttagacatttcttcatattgaatcgtcagctagagaatggttgtattgtggggtttatcgttttaacttttaactgatttactctcgttgcatttcgtttttaatcgttgtatcgtttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110699831|gb|EE077188.1|EE077188EST: AAGAAGCACTTTTTCATTCTGAGTCACTCTGGGAAACCAATATATTCCAG ATATGGAGATGAGCACAAGCTCGCAGGATTCTCAGCAACATTGCAAGCTAT
genomic: AAGAAGCACTTTTTCATTCTGAGTCACTCTGGGAAACCAATATATTCCAGgtgtggttct ... ttacatcaagATATGGAGATGAGCACAAGCTCGCAGGATTCTCAGCAACATTGCAAGCTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GACGATGCTTCTATTTCATGGAGGAAAAGAAAGAAGCACTTTTTCATTCTGAGTCACTCTGGGAAACCAATATATTCCAGgtgtggttctgctgccaagaaaatgcatattatgaattttgcaggctctattaatcccaatgcagagatctgatacaaaaaaaaaggaaagaaagaaaaa
- - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaga