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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACTTACTGGAAGAAGGTTCCTTTGATTCTATAGTGGAAGGTTGTGTTGGTGTTTTTCATACAGCGTCCCCCTTTTACTATGGAGTCACTGATCCACAGgttcattgcttaaccttattactgttggcttaattgttgctattgtttcctaacattgataaaaggggatggatttgattgaccaacttagccttgagca...

Basic information

species Vitis vinifera
transcript Vv06s0004g02370.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g02370.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA12G02230.2 (Glycine max), 5'ss of exon 2
AAACTTACTGGAAGAAGGTTCCTTTGATTCTATAGTGGAAGGTTGTGTTGGTGTTTTTCATACAGCGTCCCCCTTTTACTATGGAGTCACTGATCCACAGgtt-cattgcttaaccttattactgttggcttaattgttgctattgtttcctaacattgataaaaggggatggatttgattgaccaacttagccttgagca
| |  |  ||||||||||||||||||| ||| | |||||||| |||  ||||||||||||||| || || ||  |    | ||  ||||  || ||||||||   | |     |   || || | |   ||   ||| || ||||| ||  ||  ||      |      | | |    ||   |  | |    ||   ||
AGATCTGTTGGAAGAAGGTTCCTTTGACTCTGTTGTGGAAGGCTGTCATGGTGTTTTTCATACTGCTTCACCTGTCCGTTTTGTTGTCAACGACCCACAGgtagtactagcacataatactattctattctagtttgatggtattggttgatag-ataatgtgattcacttagctgcattttttccccctcatgttagaca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71856847|gb|DT005902.1|DT005902
EST:     GTGTTTTTCATACAGCGTCCCCCTTTTACTATGGAGTCACTGATCCACAG                         GCAGAATTGATTGATCCTGCTCTGAAGGGAACACTTAATGTCCTCAGTTCA
genomic: GTGTTTTTCATACAGCGTCCCCCTTTTACTATGGAGTCACTGATCCACAGgttcattgct ... ctcatttcagGCAGAATTGATTGATCCTGCTCTGAAGGGAACACTTAATGTCCTCAGTTCA
EST: gi|71881590|gb|DT030645.1|DT030645
EST:     GTGTTTTTCATACAGCGTCCCCCTTTTACTATGGAGTCACTGATCCACAG                         GCAGAATTGATTGATCCTGCTCTGAAGGGAACACTTAATGTCCTCAGTTCA
genomic: GTGTTTTTCATACAGCGTCCCCCTTTTACTATGGAGTCACTGATCCACAGgttcattgct ... ctcatttcagGCAGAATTGATTGATCCTGCTCTGAAGGGAACACTTAATGTCCTCAGTTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAACTTACTGGAAGAAGGTTCCTTTGATTCTATAGTGGAAGGTTGTGTTGGTGTTTTTCATACAGCGTCCCCCTTTTACTATGGAGTCACTGATCCACAGgttcattgcttaaccttattactgttggcttaattgttgctattgtttcctaacattgataaaaggggatggatttgattgaccaacttagccttgagca

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