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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGAGTTGCATGACCTTGAAGACAAAATCAAAGAATTAAAAGACAGGCAAACTTCATATGATGACATGTTGATTACCATGAACCAACTCTGGAGTCAGgtcaatattgaaaagcttgtccatgcatgctcttttctcaagatctctattccgataagatttttcattttttttgttctgcag

Basic information

species Vitis vinifera
transcript Vv06s0004g00950.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g00950.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA14G05480.1 (Glycine max), 5'ss of exon 2
GCATGAGTTGCATGACCTTGAAGACAAAATCAAAGAATTAAAAGACAGGCAAACTTCATATGATGACATGTTGATTACCATGAACCAACTCTGGAGTCAGgtcaatattgaaaagcttgtccatgcatgctcttttctcaagatctctattccgataagatttttcattttttttgttctgcag------------------
 ||||  |||||||| |||||||| ||||| | |||||||||||  | ||||| ||| ||||| ||| |||| ||| |  ||||||||||||||| |||||| | | ||    | | ||    ||  | || |     |   | |||| ||    | ||  ||||| | | ||        ||                   
ACATGCTTTGCATGATCTTGAAGAAAAAATTAGAGAATTAAAAGGAAAGCAAAGTTCCTATGACGACTTGTTAATTGCATTGAACCAACTCTGGACTCAGgttattctttgtcatcatgctt-tggtttctttaccggctgca-ctctgttggatttagtattttcctctcttgaaagtaacactactgtatgtagtgcatg

upper sequence: Vv06s0004g00950.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G43490.1 (Glycine max), 5'ss of exon 3
GCATGAGTTGCATGACCTTGAAGACAAAATCAAAGAATTAAAAGACAGGCAAACTTCATATGATGACATGTTGATTACCATGAACCAACTCTGGAGTCAGgtcaatattgaaaagcttgtccatgcatgctcttttctcaagatctctattccgataagatttttcattttttttgttctgcag------------------
 ||||  |||||||| |||||||| ||||| | |||||||||||  | ||||| ||| ||||| ||| |||| ||| |  |||||||||| |||| |||||| | | ||    | | ||    ||  | || |     |   | |||| ||  | | ||  ||||| | | ||        ||                   
ACATGCTTTGCATGATCTTGAAGAAAAAATTAGAGAATTAAAAGGAAAGCAAAGTTCCTATGACGACTTGTTAATTGCATTGAACCAACTATGGACTCAGgttattctttgtcatcatgctt-tggtttctgtaccggctgca-ctctgttgggtttagtattttcctctcttgaaagtaacaccactgtatgtagtccatg