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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACCATTTTCCTGCATCTCTTCTGGATCTTCCTTGTGTCCTGGAGTCATACAAAACTTATGACGATAGTGTGCTAATCAAAACTGCTGACATTGGTCAAgtagagtgctgtttgacattatttgacttttttttttttacagttaagtgattgcttcattactaatgcaagttgttataacag

Basic information

species Vitis vinifera
transcript Vv06s0004g00700.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g00700.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G147614_T01 (Zea mays), 5'ss of exon 3
CGACCATTTTCCTGCATCTCTTCTGGATCTTCCTTGTGTCCTGGAGTCATACAAAACTTATGACGATAGTGTGCTAATCAAAACTGCTGACATTGGTCAAgtaga-gtgc-tgtttgacattatttgacttttttttttttacagttaagtgattgcttcattactaatgcaagttg-ttataacag
 ||    ||||||||||||||  ||||||| |||  |||  |||||||||||||||| ||||| |||  ||| ||||| |||||||||||  ||||||| ||| | |||| ||||| |  | || | || | ||| ||| |  |  |  ||   | |       | | || ||      |  |||||
TGAGAGCTTTCCTGCATCTCTCTTGGATCTACCTGCTGTGGTGGAGTCATACAAAACATATGATGATTCTGTACTAATTAAAACTGCTGATGTTGGTCAGgtaaaagtgcatgtttaatgt-atgtcacctgtttatttattaaacttcgtatcttcaaatcgtccactgaaaacaaactgaaacag

upper sequence: Vv06s0004g00700.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G029038_T01 (Zea mays), 5'ss of exon 2
CGACCATTTTCCTGCATCTCTTCTGGATCTTCCTTGTGTCCTGGAGTCATACAAAACTTATGACGATAGTGTGCTAATCAAAACTGCTGACATTGGTCAAgtaga-gtgc-tgtttgacattatttgacttttttttttttacagttaagtgattgcttcattactaatgcaagttg--ttataacag
 ||    ||||||||||||||  ||||||| |||  |||  |||||||||||||||| ||||| |||  ||| ||||| |||||||||||  ||||||| ||| | |||| ||||| |  | || | || | ||| ||| |  | ||  ||   | |       | | || ||       || |||||
TGAGAGCTTTCCTGCATCTCTCTTGGATCTACCTGCTGTGGTGGAGTCATACAAAACATATGATGATTCTGTACTAATTAAAACTGCTGATGTTGGTCAGgtaaaagtgcatgtttaatgt-atgtcacctgtttatttattaaatttcgtatcttcaaatcgtccactggaaaacaaactaaaacag

upper sequence: Vv06s0004g00700.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G147614_T02 (Zea mays), 5'ss of exon 3
CGACCATTTTCCTGCATCTCTTCTGGATCTTCCTTGTGTCCTGGAGTCATACAAAACTTATGACGATAGTGTGCTAATCAAAACTGCTGACATTGGTCAAgtaga-gtgc-tgtttgacattatttgacttttttttttttacagtt-aagtgattgcttcatt-act-aatgcaagttgttataacag-----------
 ||    ||||||||||||||  ||||||| |||  |||  |||||||||||||||| ||||| |||  ||| ||||| |||||||||||  ||||||| ||| | |||| ||||| |  |   |   || ||| ||| ||| | ||    |  |    || |  ||| ||  |||  ||  | |   |           
TGAGAGCTTTCCTGCATCTCTCTTGGATCTACCTGCTGTGGTGGAGTCATACAAAACATATGATGATTCTGTACTAATTAAAACTGCTGATGTTGGTCAGgtaaaagtgcatgtttaatgtatgtcacctgtttatttattaaacttcgtatcttcaaatcgtccactgaaaacaaactgaaacagatgattatggtaag

upper sequence: Vv06s0004g00700.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G454830_T01 (Zea mays), 5'ss of exon 3
CGACCATTTTCCTGCATCTCTTCTGGATCTTCCTTGTGTCCTGGAGTCATACAAAACTTATGACGATAGTGTGCTAATCAAAACTGCTGACATTGGTCAAgtaga-gtgc-tgtttgacattatttgacttttttttttttacagttaagtgattgcttcattactaatgcaagttg--ttataacag
 ||    |||||| |||||||  ||||||| |||  |||  |||||||||||||||| ||||| |||  ||| ||||| |||||||||||  ||||||| ||| | |||| ||||| |  | || | || | ||| ||| |  | ||  ||   | |       | | || ||       || |||||
TGAGAGCTTTCCTTCATCTCTCTTGGATCTACCTGCTGTGGTGGAGTCATACAAAACATATGATGATTATGTACTAATTAAAACTGCTGATGTTGGTCAGgtaaaagtgcatgtttaatgt-atgtcacctatttatttattaaatttcgtatcttcaaatcgtccactgaaaaacaaactaaaacag

upper sequence: Vv06s0004g00700.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ19497 (Selaginella moellendorffii), 5'ss of exon 2
CGACCATTTTCCTGCATCTCTTCTGGATCTTCCTTGTGTCCTGGAGTCATACAAAACTTATGACGATAGTGTGCTAATCAAAACTGCTGACATTGGTCAAgtagagtgctgtttgacattatttgacttttttttttttacagttaagtgattgcttc----attactaatgcaagt-tgttataacag-------------
 ||||| |||   | ||| ||  | ||||||||||| ||| ||||||| ||||| ||||| ||||||| |||||| |||||  | || || ||||| || |||  |  |       |  | |||    || || |    |   |    | || |||       || ||  || |||  | || | ||||             
AGACCAGTTTGAGGTATCGCTGGTCGATCTTCCTTGCGTCGTGGAGTCCTACAAGACTTACGACGATACTGTGCTCATCAAGGCGGCCGATATTGGCCAGgtaaggatcaaaggagctctgttt--tcttcttctcggaaggatgttcttatagctcttggtgtttcttctggaagggttttcttacagctcttgggtgtag

upper sequence: Vv06s0004g00700.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ21007 (Selaginella moellendorffii), 5'ss of exon 2
CGACCATTTTCCTGCATCTCTTCTGGATCTTCCTTGTGTCCTGGAGTCATACAAAACTTATGACGATAGTGTGCTAATCAAAACTGCTGACATTGGTCAAgtagagtgctgtttgacattatttgacttttttt---------tttttacagttaagtgattgcttcattactaatgcaagttgttataacag----------
 ||||| |||   | ||| ||  | ||||||||||| ||| ||||||| ||||| ||||| ||||||| |||||| |||||  | || || ||||| || |||  |  |       |  | |||   | ||            || ||| || |   |   || ||| ||    | |    || ||| | |            
AGACCAGTTTGAGGTATCGCTGGTCGATCTTCCTTGCGTCGTGGAGTCCTACAAGACTTACGACGATACTGTGCTCATCAAGGCGGCCGATATTGGCCAGgtaaggatcaaaggagctctgttttcttcttcccggaaggatgttcttatagctc--ttggtgtttc-ttctcgaagggttttcttacagctcttgggtgtag

upper sequence: Vv06s0004g00700.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ25744 (Selaginella moellendorffii), 5'ss of exon 2
CGACCATTTTCCTGCATCTCTTCTGGATCTTCCTTGTGTCCTGGAGTCATACAAAACTTATGACGATAGTGTGCTAATCAAAACTGCTGACATTGGTCAAgtagagtgctgtttgacattatttgacttttttttttttacagttaagtgattgcttcattactaatgcaagttgttataacag
 ||| | |     |  || ||| ||||||| || |||||| |||| || ||||||||||||||| ||   ||||| |||||||| || |||||||| || ||   | | |  ||  |        ||||  |  ||  |  ||||   || | || ||  | | |                   
GGACGAGTACGAAGTCTCGCTTGTGGATCTACCCTGTGTCGTGGAATCGTACAAAACTTATGACCATTCCGTGCTGATCAAAACAGCCGACATTGGACAGgt---gcgtttgttatctcctcccaacttaatcgttact-tagtttcctg-tcgcatccatgccag------------------

upper sequence: Vv06s0004g00700.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ22202 (Selaginella moellendorffii), 5'ss of exon 2
CGACCATTTTCCTGCATCTCTTCTGGATCTTCCTTGTGTCCTGGAGTCATACAAAACTTATGACGATAGTGTGCTAATCAAAACTGCTGACATTGGTCAAgtagagtgctgtttgacattatttgacttttttttttttacagttaagtgattgcttcattactaatgcaagttgttataacag
 ||| | |     |  || ||| ||||||| || |||||| |||| || ||||||||||||||| ||   ||||| |||||||| || |||||||| || ||   | | |  ||  |        ||||  |  ||  |  ||||  ||| | || ||  | | |                   
GGACGAGTACGAAGTCTCGCTTGTGGATCTACCCTGTGTCGTGGAATCGTACAAAACTTATGACCATTCCGTGCTGATCAAAACAGCCGACATTGGACAGgt---gcgtttgttatctcctcccaacttaatcgttact-tagtttcgtg-tcgcatccatgccag------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30253284|gb|CB970835.1|CB970835
EST:     ACAAAACTTATGACGATAGTGTGCTAATCAAAACTGCTGACATT-G----                         ATGATTATGGTGCGAGAAGAAGGTGATACTGCTCCAGATGTGGTGGAGTAT
genomic: ACAAAACTTATGACGATAGTGTGCTAATCAAAACTGCTGACATTGGTCAAgtagagtgct ... gttataacagATGATTATGGTGCGAGAAGAAGGTGATACTGCTCCAGATGTGGTGGAGTAT